Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0613 and Dshi_0614 overlap by 1 nucleotides Dshi_0614 and Dshi_0615 are separated by 21 nucleotides Dshi_0615 and Dshi_0616 are separated by 111 nucleotides
Dshi_0613: Dshi_0613 - band 7 protein (RefSeq), at 606,284 to 607,171
_0613
Dshi_0614: Dshi_0614 - hypothetical protein (RefSeq), at 607,171 to 607,452
_0614
Dshi_0615: Dshi_0615 - orotidine 5'-phosphate decarboxylase (RefSeq), at 607,474 to 608,172
_0615
Dshi_0616: Dshi_0616 - hypothetical protein (RefSeq), at 608,284 to 608,697
_0616
Position (kb) 607
608 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 606.217 kb on + strand at 606.220 kb on + strand at 606.259 kb on - strand at 606.283 kb on + strand at 606.296 kb on + strand at 606.296 kb on + strand at 606.315 kb on - strand at 606.404 kb on + strand, within Dshi_0613 at 606.426 kb on + strand, within Dshi_0613 at 606.464 kb on + strand, within Dshi_0613 at 606.489 kb on + strand, within Dshi_0613 at 606.598 kb on + strand, within Dshi_0613 at 606.694 kb on + strand, within Dshi_0613 at 606.915 kb on + strand, within Dshi_0613 at 606.922 kb on + strand, within Dshi_0613 at 607.012 kb on + strand, within Dshi_0613 at 607.064 kb on + strand, within Dshi_0613 at 607.072 kb on - strand, within Dshi_0613 at 607.290 kb on + strand, within Dshi_0614 at 607.322 kb on + strand, within Dshi_0614 at 607.325 kb on + strand, within Dshi_0614 at 607.424 kb on - strand at 607.633 kb on + strand, within Dshi_0615 at 607.635 kb on + strand, within Dshi_0615 at 607.739 kb on + strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.786 kb on - strand, within Dshi_0615 at 607.827 kb on - strand, within Dshi_0615 at 607.884 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 607.929 kb on + strand, within Dshi_0615 at 608.039 kb on - strand, within Dshi_0615 at 608.055 kb on + strand, within Dshi_0615 at 608.106 kb on + strand at 608.106 kb on + strand at 608.114 kb on - strand at 608.199 kb on - strand at 608.199 kb on - strand at 608.222 kb on - strand at 608.234 kb on + strand at 608.234 kb on + strand at 608.247 kb on + strand at 608.353 kb on + strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.370 kb on - strand, within Dshi_0616 at 608.407 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.443 kb on + strand, within Dshi_0616 at 608.451 kb on + strand, within Dshi_0616
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 606,217 + +0.6 606,220 + -3.1 606,259 - +0.6 606,283 + -1.4 606,296 + -3.1 606,296 + -2.2 606,315 - -1.5 606,404 + Dshi_0613 0.14 -3.1 606,426 + Dshi_0613 0.16 -2.4 606,464 + Dshi_0613 0.20 -0.4 606,489 + Dshi_0613 0.23 +0.6 606,598 + Dshi_0613 0.35 +2.2 606,694 + Dshi_0613 0.46 +3.6 606,915 + Dshi_0613 0.71 +2.2 606,922 + Dshi_0613 0.72 +0.5 607,012 + Dshi_0613 0.82 -1.7 607,064 + Dshi_0613 0.88 -2.2 607,072 - Dshi_0613 0.89 -0.1 607,290 + Dshi_0614 0.42 -1.5 607,322 + Dshi_0614 0.54 +0.6 607,325 + Dshi_0614 0.55 -2.9 607,424 - +2.0 607,633 + Dshi_0615 0.23 +0.6 607,635 + Dshi_0615 0.23 -0.2 607,739 + Dshi_0615 0.38 -0.2 607,786 - Dshi_0615 0.45 +0.6 607,786 - Dshi_0615 0.45 +0.6 607,827 - Dshi_0615 0.51 +1.0 607,884 + Dshi_0615 0.59 -1.0 607,929 + Dshi_0615 0.65 +0.3 607,929 + Dshi_0615 0.65 -2.0 607,929 + Dshi_0615 0.65 -0.0 608,039 - Dshi_0615 0.81 -1.7 608,055 + Dshi_0615 0.83 +0.5 608,106 + -2.0 608,106 + +0.2 608,114 - -2.7 608,199 - -2.9 608,199 - +0.6 608,222 - -1.0 608,234 + -2.4 608,234 + -1.0 608,247 + -1.9 608,353 + Dshi_0616 0.17 -1.0 608,370 - Dshi_0616 0.21 -1.7 608,370 - Dshi_0616 0.21 +0.6 608,407 + Dshi_0616 0.30 +0.6 608,443 + Dshi_0616 0.38 +0.6 608,443 + Dshi_0616 0.38 -1.4 608,443 + Dshi_0616 0.38 -0.6 608,443 + Dshi_0616 0.38 +1.1 608,443 + Dshi_0616 0.38 -0.5 608,451 + Dshi_0616 0.40 -1.4
Or see this region's nucleotide sequence