Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0534

Experiment: m.b. Chlorate 40 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0532 and Dshi_0533 overlap by 1 nucleotidesDshi_0533 and Dshi_0534 are separated by 22 nucleotidesDshi_0534 and Dshi_0535 overlap by 1 nucleotides Dshi_0532: Dshi_0532 - transcriptional regulator, DeoR family (RefSeq), at 517,065 to 518,039 _0532 Dshi_0533: Dshi_0533 - Xylose isomerase domain protein TIM barrel (RefSeq), at 518,039 to 518,887 _0533 Dshi_0534: Dshi_0534 - dehydrogenase E1 component (RefSeq), at 518,910 to 519,929 _0534 Dshi_0535: Dshi_0535 - Transketolase central region (RefSeq), at 519,929 to 520,912 _0535 Position (kb) 518 519 520Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 517.930 kb on + strand, within Dshi_0532at 517.942 kb on + strandat 517.942 kb on + strandat 517.950 kb on + strandat 517.950 kb on - strandat 517.995 kb on - strandat 518.007 kb on - strandat 518.022 kb on - strandat 518.031 kb on + strandat 518.079 kb on + strandat 518.087 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.091 kb on - strandat 518.116 kb on + strandat 518.117 kb on + strandat 518.124 kb on - strand, within Dshi_0533at 518.124 kb on - strand, within Dshi_0533at 518.161 kb on - strand, within Dshi_0533at 518.175 kb on - strand, within Dshi_0533at 518.275 kb on - strand, within Dshi_0533at 518.292 kb on + strand, within Dshi_0533at 518.322 kb on + strand, within Dshi_0533at 518.363 kb on - strand, within Dshi_0533at 518.414 kb on + strand, within Dshi_0533at 518.437 kb on + strand, within Dshi_0533at 518.497 kb on + strand, within Dshi_0533at 518.525 kb on - strand, within Dshi_0533at 518.541 kb on + strand, within Dshi_0533at 518.546 kb on + strand, within Dshi_0533at 518.571 kb on - strand, within Dshi_0533at 518.599 kb on - strand, within Dshi_0533at 518.635 kb on + strand, within Dshi_0533at 518.665 kb on + strand, within Dshi_0533at 518.672 kb on + strand, within Dshi_0533at 518.685 kb on - strand, within Dshi_0533at 518.755 kb on - strand, within Dshi_0533at 518.811 kb on + strandat 518.849 kb on + strandat 518.881 kb on + strandat 518.892 kb on + strandat 518.910 kb on - strandat 518.934 kb on - strandat 518.935 kb on - strandat 518.982 kb on + strandat 518.987 kb on + strandat 518.999 kb on - strandat 519.018 kb on - strand, within Dshi_0534at 519.021 kb on - strand, within Dshi_0534at 519.051 kb on + strand, within Dshi_0534at 519.069 kb on - strand, within Dshi_0534at 519.135 kb on + strand, within Dshi_0534at 519.143 kb on - strand, within Dshi_0534at 519.196 kb on - strand, within Dshi_0534at 519.252 kb on - strand, within Dshi_0534at 519.280 kb on + strand, within Dshi_0534at 519.280 kb on + strand, within Dshi_0534at 519.281 kb on - strand, within Dshi_0534at 519.289 kb on + strand, within Dshi_0534at 519.308 kb on - strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.351 kb on + strand, within Dshi_0534at 519.359 kb on - strand, within Dshi_0534at 519.456 kb on - strand, within Dshi_0534at 519.458 kb on + strand, within Dshi_0534at 519.466 kb on - strand, within Dshi_0534at 519.477 kb on - strand, within Dshi_0534at 519.506 kb on + strand, within Dshi_0534at 519.579 kb on + strand, within Dshi_0534at 519.579 kb on + strand, within Dshi_0534at 519.663 kb on - strand, within Dshi_0534at 519.702 kb on - strand, within Dshi_0534at 519.746 kb on + strand, within Dshi_0534at 519.759 kb on + strand, within Dshi_0534at 519.759 kb on + strand, within Dshi_0534at 519.762 kb on + strand, within Dshi_0534at 519.767 kb on - strand, within Dshi_0534at 519.770 kb on - strand, within Dshi_0534at 519.775 kb on - strand, within Dshi_0534at 519.825 kb on + strand, within Dshi_0534at 519.877 kb on - strandat 519.883 kb on - strandat 519.940 kb on + strandat 519.940 kb on + strandat 520.042 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.133 kb on + strand, within Dshi_0535at 520.154 kb on + strand, within Dshi_0535at 520.172 kb on + strand, within Dshi_0535at 520.288 kb on + strand, within Dshi_0535at 520.301 kb on - strand, within Dshi_0535at 520.316 kb on + strand, within Dshi_0535at 520.324 kb on - strand, within Dshi_0535at 520.353 kb on + strand, within Dshi_0535at 520.580 kb on + strand, within Dshi_0535at 520.589 kb on - strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.592 kb on + strand, within Dshi_0535at 520.645 kb on - strand, within Dshi_0535at 520.655 kb on - strand, within Dshi_0535at 520.673 kb on + strand, within Dshi_0535at 520.684 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on + strand, within Dshi_0535at 520.731 kb on - strand, within Dshi_0535at 520.742 kb on - strand, within Dshi_0535at 520.751 kb on - strand, within Dshi_0535at 520.779 kb on - strand, within Dshi_0535at 520.796 kb on + strand, within Dshi_0535at 520.822 kb on - strandat 520.833 kb on + strandat 520.925 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
remove
517,930 + Dshi_0532 0.89 -0.7
517,942 + -1.6
517,942 + -0.4
517,950 + +0.8
517,950 - +0.9
517,995 - +0.5
518,007 - +0.0
518,022 - +1.4
518,031 + +0.5
518,079 + +3.1
518,087 - +2.0
518,091 - -0.5
518,091 - -0.7
518,091 - -0.6
518,091 - -1.1
518,116 + +0.4
518,117 + +4.8
518,124 - Dshi_0533 0.10 +1.9
518,124 - Dshi_0533 0.10 -0.5
518,161 - Dshi_0533 0.14 +1.0
518,175 - Dshi_0533 0.16 +0.0
518,275 - Dshi_0533 0.28 +0.3
518,292 + Dshi_0533 0.30 +0.5
518,322 + Dshi_0533 0.33 -2.3
518,363 - Dshi_0533 0.38 -1.5
518,414 + Dshi_0533 0.44 -1.5
518,437 + Dshi_0533 0.47 +1.3
518,497 + Dshi_0533 0.54 +0.8
518,525 - Dshi_0533 0.57 +1.1
518,541 + Dshi_0533 0.59 -0.1
518,546 + Dshi_0533 0.60 -0.4
518,571 - Dshi_0533 0.63 -2.6
518,599 - Dshi_0533 0.66 +0.8
518,635 + Dshi_0533 0.70 +0.2
518,665 + Dshi_0533 0.74 +0.5
518,672 + Dshi_0533 0.75 +1.8
518,685 - Dshi_0533 0.76 +0.3
518,755 - Dshi_0533 0.84 -0.6
518,811 + +1.1
518,849 + +0.5
518,881 + +1.4
518,892 + +0.3
518,910 - +0.2
518,934 - +0.8
518,935 - +0.7
518,982 + -2.1
518,987 + +2.8
518,999 - -0.3
519,018 - Dshi_0534 0.11 +0.4
519,021 - Dshi_0534 0.11 +1.0
519,051 + Dshi_0534 0.14 +0.1
519,069 - Dshi_0534 0.16 +0.9
519,135 + Dshi_0534 0.22 +0.1
519,143 - Dshi_0534 0.23 +1.5
519,196 - Dshi_0534 0.28 -1.5
519,252 - Dshi_0534 0.34 +1.0
519,280 + Dshi_0534 0.36 +0.4
519,280 + Dshi_0534 0.36 +0.1
519,281 - Dshi_0534 0.36 +0.9
519,289 + Dshi_0534 0.37 +0.7
519,308 - Dshi_0534 0.39 +0.2
519,351 + Dshi_0534 0.43 +2.0
519,351 + Dshi_0534 0.43 +0.1
519,351 + Dshi_0534 0.43 +0.2
519,351 + Dshi_0534 0.43 +1.5
519,359 - Dshi_0534 0.44 -0.2
519,456 - Dshi_0534 0.54 -0.4
519,458 + Dshi_0534 0.54 -0.1
519,466 - Dshi_0534 0.55 +1.6
519,477 - Dshi_0534 0.56 +0.4
519,506 + Dshi_0534 0.58 -0.1
519,579 + Dshi_0534 0.66 +1.3
519,579 + Dshi_0534 0.66 +0.8
519,663 - Dshi_0534 0.74 +1.5
519,702 - Dshi_0534 0.78 -0.8
519,746 + Dshi_0534 0.82 +0.8
519,759 + Dshi_0534 0.83 +1.0
519,759 + Dshi_0534 0.83 -4.1
519,762 + Dshi_0534 0.84 +2.4
519,767 - Dshi_0534 0.84 +2.0
519,770 - Dshi_0534 0.84 +0.2
519,775 - Dshi_0534 0.85 +1.5
519,825 + Dshi_0534 0.90 +0.6
519,877 - +1.1
519,883 - -0.7
519,940 + +0.7
519,940 + -0.9
520,042 + Dshi_0535 0.11 +0.0
520,133 + Dshi_0535 0.21 -1.4
520,133 + Dshi_0535 0.21 -0.4
520,154 + Dshi_0535 0.23 +0.2
520,172 + Dshi_0535 0.25 +2.8
520,288 + Dshi_0535 0.36 +0.4
520,301 - Dshi_0535 0.38 -3.2
520,316 + Dshi_0535 0.39 -0.3
520,324 - Dshi_0535 0.40 +1.4
520,353 + Dshi_0535 0.43 -0.5
520,580 + Dshi_0535 0.66 +0.8
520,589 - Dshi_0535 0.67 +2.0
520,592 + Dshi_0535 0.67 -0.1
520,592 + Dshi_0535 0.67 +0.5
520,645 - Dshi_0535 0.73 +1.9
520,655 - Dshi_0535 0.74 +1.4
520,673 + Dshi_0535 0.76 +0.2
520,684 + Dshi_0535 0.77 -1.9
520,731 + Dshi_0535 0.82 -0.4
520,731 + Dshi_0535 0.82 +0.0
520,731 - Dshi_0535 0.82 +0.6
520,742 - Dshi_0535 0.83 +0.0
520,751 - Dshi_0535 0.84 +1.1
520,779 - Dshi_0535 0.86 +3.0
520,796 + Dshi_0535 0.88 +0.1
520,822 - +0.7
520,833 + -1.1
520,925 + -0.5

Or see this region's nucleotide sequence