Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0455 and Dshi_0456 are separated by 92 nucleotides Dshi_0456 and Dshi_0457 overlap by 4 nucleotides Dshi_0457 and Dshi_0458 overlap by 4 nucleotides
Dshi_0455: Dshi_0455 - hypothetical protein (RefSeq), at 442,029 to 442,946
_0455
Dshi_0456: Dshi_0456 - ATPase associated with various cellular activities AAA_3 (RefSeq), at 443,039 to 443,995
_0456
Dshi_0457: Dshi_0457 - protein of unknown function DUF58 (RefSeq), at 443,992 to 444,900
_0457
Dshi_0458: Dshi_0458 - hypothetical protein (RefSeq), at 444,897 to 445,268
_0458
Position (kb) 443
444 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 442.070 kb on + strand at 442.107 kb on - strand at 442.112 kb on + strand at 442.200 kb on + strand, within Dshi_0455 at 442.204 kb on + strand, within Dshi_0455 at 442.211 kb on + strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.212 kb on - strand, within Dshi_0455 at 442.218 kb on - strand, within Dshi_0455 at 442.233 kb on - strand, within Dshi_0455 at 442.289 kb on - strand, within Dshi_0455 at 442.315 kb on + strand, within Dshi_0455 at 442.315 kb on + strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.323 kb on - strand, within Dshi_0455 at 442.337 kb on + strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.345 kb on - strand, within Dshi_0455 at 442.372 kb on + strand, within Dshi_0455 at 442.393 kb on - strand, within Dshi_0455 at 442.407 kb on + strand, within Dshi_0455 at 442.434 kb on + strand, within Dshi_0455 at 442.435 kb on + strand, within Dshi_0455 at 442.442 kb on - strand, within Dshi_0455 at 442.454 kb on - strand, within Dshi_0455 at 442.469 kb on + strand, within Dshi_0455 at 442.477 kb on - strand, within Dshi_0455 at 442.485 kb on + strand, within Dshi_0455 at 442.498 kb on - strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.509 kb on + strand, within Dshi_0455 at 442.517 kb on - strand, within Dshi_0455 at 442.517 kb on - strand, within Dshi_0455 at 442.522 kb on + strand, within Dshi_0455 at 442.553 kb on + strand, within Dshi_0455 at 442.561 kb on - strand, within Dshi_0455 at 442.577 kb on + strand, within Dshi_0455 at 442.582 kb on - strand, within Dshi_0455 at 442.601 kb on + strand, within Dshi_0455 at 442.631 kb on + strand, within Dshi_0455 at 442.640 kb on - strand, within Dshi_0455 at 442.653 kb on + strand, within Dshi_0455 at 442.653 kb on + strand, within Dshi_0455 at 442.661 kb on - strand, within Dshi_0455 at 442.664 kb on + strand, within Dshi_0455 at 442.677 kb on - strand, within Dshi_0455 at 442.680 kb on + strand, within Dshi_0455 at 442.688 kb on - strand, within Dshi_0455 at 442.749 kb on - strand, within Dshi_0455 at 442.791 kb on - strand, within Dshi_0455 at 442.803 kb on + strand, within Dshi_0455 at 442.803 kb on + strand, within Dshi_0455 at 442.804 kb on + strand, within Dshi_0455 at 442.811 kb on - strand, within Dshi_0455 at 442.811 kb on - strand, within Dshi_0455 at 442.819 kb on - strand, within Dshi_0455 at 442.824 kb on - strand, within Dshi_0455 at 442.893 kb on - strand at 442.895 kb on + strand at 442.895 kb on + strand at 442.903 kb on - strand at 442.953 kb on + strand at 442.984 kb on - strand at 443.023 kb on + strand at 443.031 kb on - strand at 443.033 kb on + strand at 443.056 kb on - strand at 443.123 kb on - strand at 443.205 kb on - strand, within Dshi_0456 at 443.207 kb on + strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.256 kb on - strand, within Dshi_0456 at 443.304 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.311 kb on + strand, within Dshi_0456 at 443.342 kb on + strand, within Dshi_0456 at 443.352 kb on + strand, within Dshi_0456 at 443.376 kb on + strand, within Dshi_0456 at 443.379 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.421 kb on - strand, within Dshi_0456 at 443.431 kb on + strand, within Dshi_0456 at 443.432 kb on - strand, within Dshi_0456 at 443.445 kb on - strand, within Dshi_0456 at 443.563 kb on + strand, within Dshi_0456 at 443.578 kb on + strand, within Dshi_0456 at 443.634 kb on - strand, within Dshi_0456 at 443.636 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.637 kb on + strand, within Dshi_0456 at 443.639 kb on - strand, within Dshi_0456 at 443.671 kb on - strand, within Dshi_0456 at 443.683 kb on - strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.685 kb on + strand, within Dshi_0456 at 443.693 kb on - strand, within Dshi_0456 at 443.721 kb on + strand, within Dshi_0456 at 443.737 kb on + strand, within Dshi_0456 at 443.745 kb on - strand, within Dshi_0456 at 443.772 kb on + strand, within Dshi_0456 at 443.790 kb on + strand, within Dshi_0456 at 443.797 kb on + strand, within Dshi_0456 at 443.801 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.806 kb on + strand, within Dshi_0456 at 443.812 kb on + strand, within Dshi_0456 at 443.814 kb on - strand, within Dshi_0456 at 443.847 kb on + strand, within Dshi_0456 at 443.863 kb on + strand, within Dshi_0456 at 443.884 kb on - strand, within Dshi_0456 at 443.912 kb on + strand at 443.912 kb on + strand at 443.948 kb on - strand at 443.979 kb on - strand at 444.020 kb on - strand at 444.054 kb on + strand at 444.127 kb on - strand, within Dshi_0457 at 444.203 kb on - strand, within Dshi_0457 at 444.291 kb on + strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.294 kb on - strand, within Dshi_0457 at 444.299 kb on - strand, within Dshi_0457 at 444.372 kb on - strand, within Dshi_0457 at 444.389 kb on - strand, within Dshi_0457 at 444.420 kb on - strand, within Dshi_0457 at 444.526 kb on - strand, within Dshi_0457 at 444.541 kb on + strand, within Dshi_0457 at 444.559 kb on + strand, within Dshi_0457 at 444.688 kb on - strand, within Dshi_0457 at 444.712 kb on - strand, within Dshi_0457 at 444.801 kb on - strand, within Dshi_0457 at 444.864 kb on - strand at 444.886 kb on - strand at 444.946 kb on + strand, within Dshi_0458 at 444.977 kb on + strand, within Dshi_0458 at 444.982 kb on + strand, within Dshi_0458 at 444.992 kb on + strand, within Dshi_0458
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 442,070 + +1.1 442,107 - -0.9 442,112 + -0.6 442,200 + Dshi_0455 0.19 +0.9 442,204 + Dshi_0455 0.19 -3.5 442,211 + Dshi_0455 0.20 +0.2 442,212 - Dshi_0455 0.20 -0.1 442,212 - Dshi_0455 0.20 -0.1 442,212 - Dshi_0455 0.20 -0.4 442,218 - Dshi_0455 0.21 -1.3 442,233 - Dshi_0455 0.22 +0.6 442,289 - Dshi_0455 0.28 -0.2 442,315 + Dshi_0455 0.31 -2.8 442,315 + Dshi_0455 0.31 -1.6 442,323 - Dshi_0455 0.32 -5.2 442,323 - Dshi_0455 0.32 -2.5 442,323 - Dshi_0455 0.32 -1.1 442,337 + Dshi_0455 0.34 +1.0 442,345 - Dshi_0455 0.34 -0.3 442,345 - Dshi_0455 0.34 -0.5 442,345 - Dshi_0455 0.34 -0.0 442,372 + Dshi_0455 0.37 -1.9 442,393 - Dshi_0455 0.40 -1.1 442,407 + Dshi_0455 0.41 +1.5 442,434 + Dshi_0455 0.44 +0.5 442,435 + Dshi_0455 0.44 -2.7 442,442 - Dshi_0455 0.45 +0.4 442,454 - Dshi_0455 0.46 -0.7 442,469 + Dshi_0455 0.48 +0.4 442,477 - Dshi_0455 0.49 -2.8 442,485 + Dshi_0455 0.50 -2.2 442,498 - Dshi_0455 0.51 -0.5 442,509 + Dshi_0455 0.52 -2.8 442,509 + Dshi_0455 0.52 -4.2 442,509 + Dshi_0455 0.52 -1.3 442,509 + Dshi_0455 0.52 -1.1 442,517 - Dshi_0455 0.53 -0.3 442,517 - Dshi_0455 0.53 +0.5 442,522 + Dshi_0455 0.54 -0.4 442,553 + Dshi_0455 0.57 +0.3 442,561 - Dshi_0455 0.58 +0.1 442,577 + Dshi_0455 0.60 +0.9 442,582 - Dshi_0455 0.60 -0.7 442,601 + Dshi_0455 0.62 +0.5 442,631 + Dshi_0455 0.66 +0.2 442,640 - Dshi_0455 0.67 -0.9 442,653 + Dshi_0455 0.68 +0.9 442,653 + Dshi_0455 0.68 -4.3 442,661 - Dshi_0455 0.69 -1.2 442,664 + Dshi_0455 0.69 -0.3 442,677 - Dshi_0455 0.71 -2.3 442,680 + Dshi_0455 0.71 -1.3 442,688 - Dshi_0455 0.72 -1.6 442,749 - Dshi_0455 0.78 -1.2 442,791 - Dshi_0455 0.83 +0.9 442,803 + Dshi_0455 0.84 +0.5 442,803 + Dshi_0455 0.84 -1.2 442,804 + Dshi_0455 0.84 -2.3 442,811 - Dshi_0455 0.85 -1.1 442,811 - Dshi_0455 0.85 -1.5 442,819 - Dshi_0455 0.86 -0.4 442,824 - Dshi_0455 0.87 -0.5 442,893 - +2.1 442,895 + -0.5 442,895 + -0.6 442,903 - +2.1 442,953 + -0.5 442,984 - -0.6 443,023 + -1.5 443,031 - +2.4 443,033 + +0.1 443,056 - -0.1 443,123 - +2.3 443,205 - Dshi_0456 0.17 -1.6 443,207 + Dshi_0456 0.18 -1.1 443,256 - Dshi_0456 0.23 -0.5 443,256 - Dshi_0456 0.23 -1.8 443,304 + Dshi_0456 0.28 -0.8 443,311 + Dshi_0456 0.28 -0.5 443,311 + Dshi_0456 0.28 -2.3 443,342 + Dshi_0456 0.32 +1.7 443,352 + Dshi_0456 0.33 -1.6 443,376 + Dshi_0456 0.35 -1.5 443,379 - Dshi_0456 0.36 -1.7 443,421 - Dshi_0456 0.40 -0.6 443,421 - Dshi_0456 0.40 +0.5 443,431 + Dshi_0456 0.41 +0.5 443,432 - Dshi_0456 0.41 -0.0 443,445 - Dshi_0456 0.42 -1.5 443,563 + Dshi_0456 0.55 -3.6 443,578 + Dshi_0456 0.56 -1.5 443,634 - Dshi_0456 0.62 -0.7 443,636 + Dshi_0456 0.62 -1.6 443,637 + Dshi_0456 0.62 +1.5 443,637 + Dshi_0456 0.62 -1.0 443,637 + Dshi_0456 0.62 +1.0 443,639 - Dshi_0456 0.63 -2.1 443,671 - Dshi_0456 0.66 -1.1 443,683 - Dshi_0456 0.67 -0.5 443,685 + Dshi_0456 0.68 -0.5 443,685 + Dshi_0456 0.68 -1.7 443,693 - Dshi_0456 0.68 -0.6 443,721 + Dshi_0456 0.71 -1.8 443,737 + Dshi_0456 0.73 -0.3 443,745 - Dshi_0456 0.74 -2.2 443,772 + Dshi_0456 0.77 +1.8 443,790 + Dshi_0456 0.78 +0.2 443,797 + Dshi_0456 0.79 +1.5 443,801 + Dshi_0456 0.80 +1.2 443,806 + Dshi_0456 0.80 +2.6 443,806 + Dshi_0456 0.80 +1.5 443,812 + Dshi_0456 0.81 -1.1 443,814 - Dshi_0456 0.81 -0.4 443,847 + Dshi_0456 0.84 +0.5 443,863 + Dshi_0456 0.86 -0.1 443,884 - Dshi_0456 0.88 +0.5 443,912 + +0.0 443,912 + -2.3 443,948 - -0.5 443,979 - -2.5 444,020 - +0.3 444,054 + +1.4 444,127 - Dshi_0457 0.15 -0.5 444,203 - Dshi_0457 0.23 -1.7 444,291 + Dshi_0457 0.33 -0.8 444,294 - Dshi_0457 0.33 -1.5 444,294 - Dshi_0457 0.33 -1.5 444,294 - Dshi_0457 0.33 -1.3 444,294 - Dshi_0457 0.33 -2.5 444,299 - Dshi_0457 0.34 -2.5 444,372 - Dshi_0457 0.42 -0.5 444,389 - Dshi_0457 0.44 -3.6 444,420 - Dshi_0457 0.47 +1.5 444,526 - Dshi_0457 0.59 +0.7 444,541 + Dshi_0457 0.60 +0.5 444,559 + Dshi_0457 0.62 -0.3 444,688 - Dshi_0457 0.77 -0.5 444,712 - Dshi_0457 0.79 -1.1 444,801 - Dshi_0457 0.89 +0.3 444,864 - -1.1 444,886 - +0.5 444,946 + Dshi_0458 0.13 -1.6 444,977 + Dshi_0458 0.22 +0.1 444,982 + Dshi_0458 0.23 -0.9 444,992 + Dshi_0458 0.26 -1.5
Or see this region's nucleotide sequence