Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0111

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0109 and Dshi_0110 overlap by 1 nucleotidesDshi_0110 and Dshi_0111 are separated by 90 nucleotidesDshi_0111 and Dshi_0112 are separated by 20 nucleotides Dshi_0109: Dshi_0109 - Auxin Efflux Carrier (RefSeq), at 108,100 to 109,035 _0109 Dshi_0110: Dshi_0110 - protein of unknown function DUF188 (RefSeq), at 109,035 to 109,487 _0110 Dshi_0111: Dshi_0111 - major facilitator superfamily MFS_1 (RefSeq), at 109,578 to 110,813 _0111 Dshi_0112: Dshi_0112 - AFG1-family ATPase (RefSeq), at 110,834 to 112,003 _0112 Position (kb) 109 110 111Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 108.592 kb on - strand, within Dshi_0109at 108.603 kb on + strand, within Dshi_0109at 108.628 kb on + strand, within Dshi_0109at 108.636 kb on - strand, within Dshi_0109at 108.636 kb on - strand, within Dshi_0109at 108.739 kb on - strand, within Dshi_0109at 108.777 kb on - strand, within Dshi_0109at 108.840 kb on - strand, within Dshi_0109at 108.925 kb on - strand, within Dshi_0109at 108.927 kb on + strand, within Dshi_0109at 108.979 kb on + strandat 108.980 kb on - strandat 109.075 kb on - strandat 109.122 kb on + strand, within Dshi_0110at 109.134 kb on + strand, within Dshi_0110at 109.186 kb on + strand, within Dshi_0110at 109.194 kb on - strand, within Dshi_0110at 109.244 kb on - strand, within Dshi_0110at 109.252 kb on + strand, within Dshi_0110at 109.285 kb on + strand, within Dshi_0110at 109.293 kb on - strand, within Dshi_0110at 109.293 kb on - strand, within Dshi_0110at 109.293 kb on - strand, within Dshi_0110at 109.552 kb on + strandat 109.560 kb on - strandat 109.628 kb on + strandat 109.668 kb on - strandat 109.763 kb on - strand, within Dshi_0111at 109.770 kb on + strand, within Dshi_0111at 109.802 kb on + strand, within Dshi_0111at 109.802 kb on + strand, within Dshi_0111at 109.862 kb on - strand, within Dshi_0111at 109.886 kb on + strand, within Dshi_0111at 109.912 kb on - strand, within Dshi_0111at 109.974 kb on - strand, within Dshi_0111at 110.010 kb on - strand, within Dshi_0111at 110.023 kb on - strand, within Dshi_0111at 110.117 kb on - strand, within Dshi_0111at 110.138 kb on + strand, within Dshi_0111at 110.149 kb on + strand, within Dshi_0111at 110.169 kb on + strand, within Dshi_0111at 110.189 kb on + strand, within Dshi_0111at 110.232 kb on + strand, within Dshi_0111at 110.239 kb on - strand, within Dshi_0111at 110.248 kb on + strand, within Dshi_0111at 110.334 kb on + strand, within Dshi_0111at 110.357 kb on - strand, within Dshi_0111at 110.462 kb on - strand, within Dshi_0111at 110.489 kb on - strand, within Dshi_0111at 110.516 kb on + strand, within Dshi_0111at 110.557 kb on + strand, within Dshi_0111at 110.697 kb on - strandat 110.713 kb on - strandat 110.773 kb on + strandat 110.798 kb on - strandat 110.896 kb on + strandat 110.943 kb on + strandat 110.943 kb on + strandat 110.982 kb on + strand, within Dshi_0112at 111.033 kb on - strand, within Dshi_0112at 111.120 kb on + strand, within Dshi_0112at 111.166 kb on + strand, within Dshi_0112at 111.395 kb on - strand, within Dshi_0112at 111.459 kb on + strand, within Dshi_0112at 111.525 kb on + strand, within Dshi_0112at 111.613 kb on - strand, within Dshi_0112at 111.614 kb on + strand, within Dshi_0112at 111.745 kb on + strand, within Dshi_0112at 111.750 kb on + strand, within Dshi_0112at 111.760 kb on + strand, within Dshi_0112

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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108,592 - Dshi_0109 0.53 -1.1
108,603 + Dshi_0109 0.54 -0.9
108,628 + Dshi_0109 0.56 -2.2
108,636 - Dshi_0109 0.57 -0.7
108,636 - Dshi_0109 0.57 -0.9
108,739 - Dshi_0109 0.68 -0.2
108,777 - Dshi_0109 0.72 -0.1
108,840 - Dshi_0109 0.79 -0.4
108,925 - Dshi_0109 0.88 +0.9
108,927 + Dshi_0109 0.88 -0.5
108,979 + +0.5
108,980 - +0.7
109,075 - +0.6
109,122 + Dshi_0110 0.19 -2.3
109,134 + Dshi_0110 0.22 +0.1
109,186 + Dshi_0110 0.33 -0.3
109,194 - Dshi_0110 0.35 +0.5
109,244 - Dshi_0110 0.46 +0.4
109,252 + Dshi_0110 0.48 -1.1
109,285 + Dshi_0110 0.55 +2.1
109,293 - Dshi_0110 0.57 +0.1
109,293 - Dshi_0110 0.57 +0.7
109,293 - Dshi_0110 0.57 +0.1
109,552 + +2.6
109,560 - -0.2
109,628 + +0.4
109,668 - -4.3
109,763 - Dshi_0111 0.15 -4.3
109,770 + Dshi_0111 0.16 +0.7
109,802 + Dshi_0111 0.18 -2.7
109,802 + Dshi_0111 0.18 +4.4
109,862 - Dshi_0111 0.23 -0.3
109,886 + Dshi_0111 0.25 +0.4
109,912 - Dshi_0111 0.27 -0.4
109,974 - Dshi_0111 0.32 -0.7
110,010 - Dshi_0111 0.35 +1.1
110,023 - Dshi_0111 0.36 +0.5
110,117 - Dshi_0111 0.44 +0.6
110,138 + Dshi_0111 0.45 -2.6
110,149 + Dshi_0111 0.46 -2.4
110,169 + Dshi_0111 0.48 +0.1
110,189 + Dshi_0111 0.49 -0.5
110,232 + Dshi_0111 0.53 +0.3
110,239 - Dshi_0111 0.53 -0.9
110,248 + Dshi_0111 0.54 +3.4
110,334 + Dshi_0111 0.61 -0.2
110,357 - Dshi_0111 0.63 -1.5
110,462 - Dshi_0111 0.72 -1.6
110,489 - Dshi_0111 0.74 +1.1
110,516 + Dshi_0111 0.76 +0.8
110,557 + Dshi_0111 0.79 -1.9
110,697 - -0.5
110,713 - -2.5
110,773 + +1.4
110,798 - -2.5
110,896 + -0.8
110,943 + +1.3
110,943 + -0.7
110,982 + Dshi_0112 0.13 +0.1
111,033 - Dshi_0112 0.17 +1.3
111,120 + Dshi_0112 0.24 +0.8
111,166 + Dshi_0112 0.28 -2.3
111,395 - Dshi_0112 0.48 -2.8
111,459 + Dshi_0112 0.53 +0.1
111,525 + Dshi_0112 0.59 +1.6
111,613 - Dshi_0112 0.67 +1.5
111,614 + Dshi_0112 0.67 -1.3
111,745 + Dshi_0112 0.78 -0.7
111,750 + Dshi_0112 0.78 -0.7
111,760 + Dshi_0112 0.79 +3.1

Or see this region's nucleotide sequence