Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0103

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0102 and Dshi_0103 are separated by 105 nucleotidesDshi_0103 and Dshi_0104 overlap by 4 nucleotidesDshi_0104 and Dshi_0105 are separated by 11 nucleotides Dshi_0102: Dshi_0102 - DNA polymerase III, alpha subunit (RefSeq), at 99,840 to 102,824 _0102 Dshi_0103: Dshi_0103 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 102,930 to 104,042 _0103 Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527 _0104 Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249 _0105 Position (kb) 102 103 104 105Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 101.942 kb on + strand, within Dshi_0102at 101.942 kb on + strand, within Dshi_0102at 101.973 kb on - strand, within Dshi_0102at 101.977 kb on + strand, within Dshi_0102at 102.028 kb on - strand, within Dshi_0102at 102.034 kb on - strand, within Dshi_0102at 102.043 kb on + strand, within Dshi_0102at 102.080 kb on + strand, within Dshi_0102at 102.088 kb on - strand, within Dshi_0102at 102.088 kb on - strand, within Dshi_0102at 102.149 kb on - strand, within Dshi_0102at 102.273 kb on + strand, within Dshi_0102at 102.307 kb on + strand, within Dshi_0102at 102.318 kb on - strand, within Dshi_0102at 102.339 kb on + strand, within Dshi_0102at 102.347 kb on + strand, within Dshi_0102at 102.417 kb on + strand, within Dshi_0102at 102.418 kb on - strand, within Dshi_0102at 102.453 kb on + strand, within Dshi_0102at 102.459 kb on + strand, within Dshi_0102at 102.468 kb on + strand, within Dshi_0102at 102.612 kb on - strandat 102.612 kb on - strandat 102.623 kb on - strandat 102.733 kb on - strandat 102.739 kb on + strandat 102.792 kb on + strandat 102.841 kb on + strandat 102.849 kb on - strandat 102.849 kb on - strandat 102.922 kb on + strandat 102.929 kb on - strandat 102.945 kb on + strandat 103.000 kb on + strandat 103.000 kb on + strandat 103.008 kb on - strandat 103.015 kb on - strandat 103.028 kb on + strandat 103.036 kb on - strandat 103.080 kb on + strand, within Dshi_0103at 103.091 kb on + strand, within Dshi_0103at 103.152 kb on - strand, within Dshi_0103at 103.240 kb on + strand, within Dshi_0103at 103.248 kb on - strand, within Dshi_0103at 103.264 kb on + strand, within Dshi_0103at 103.362 kb on - strand, within Dshi_0103at 103.395 kb on + strand, within Dshi_0103at 103.454 kb on + strand, within Dshi_0103at 103.530 kb on - strand, within Dshi_0103at 103.584 kb on + strand, within Dshi_0103at 103.592 kb on - strand, within Dshi_0103at 103.652 kb on + strand, within Dshi_0103at 103.665 kb on + strand, within Dshi_0103at 103.696 kb on - strand, within Dshi_0103at 103.711 kb on + strand, within Dshi_0103at 103.744 kb on - strand, within Dshi_0103at 103.772 kb on - strand, within Dshi_0103at 103.918 kb on + strand, within Dshi_0103at 103.979 kb on + strandat 103.987 kb on - strandat 104.044 kb on - strandat 104.060 kb on + strandat 104.060 kb on + strandat 104.068 kb on - strandat 104.092 kb on - strand, within Dshi_0104at 104.092 kb on - strand, within Dshi_0104at 104.132 kb on - strand, within Dshi_0104at 104.194 kb on + strand, within Dshi_0104at 104.194 kb on - strand, within Dshi_0104at 104.202 kb on - strand, within Dshi_0104at 104.229 kb on + strand, within Dshi_0104at 104.272 kb on - strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.308 kb on + strand, within Dshi_0104at 104.310 kb on + strand, within Dshi_0104at 104.388 kb on + strand, within Dshi_0104at 104.489 kb on - strandat 104.647 kb on + strand, within Dshi_0105at 104.666 kb on - strand, within Dshi_0105at 104.666 kb on - strand, within Dshi_0105at 104.694 kb on - strand, within Dshi_0105at 104.731 kb on + strand, within Dshi_0105at 104.830 kb on + strand, within Dshi_0105at 104.867 kb on + strand, within Dshi_0105at 104.960 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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101,942 + Dshi_0102 0.70 -2.7
101,942 + Dshi_0102 0.70 +1.1
101,973 - Dshi_0102 0.71 +0.4
101,977 + Dshi_0102 0.72 -0.7
102,028 - Dshi_0102 0.73 +1.1
102,034 - Dshi_0102 0.74 -1.8
102,043 + Dshi_0102 0.74 +0.7
102,080 + Dshi_0102 0.75 -1.3
102,088 - Dshi_0102 0.75 +1.1
102,088 - Dshi_0102 0.75 +4.5
102,149 - Dshi_0102 0.77 +1.1
102,273 + Dshi_0102 0.82 +0.1
102,307 + Dshi_0102 0.83 -0.5
102,318 - Dshi_0102 0.83 +3.6
102,339 + Dshi_0102 0.84 -0.5
102,347 + Dshi_0102 0.84 +0.9
102,417 + Dshi_0102 0.86 -3.3
102,418 - Dshi_0102 0.86 -1.1
102,453 + Dshi_0102 0.88 -0.9
102,459 + Dshi_0102 0.88 -0.7
102,468 + Dshi_0102 0.88 -0.1
102,612 - +1.1
102,612 - -1.5
102,623 - -1.9
102,733 - -0.9
102,739 + -0.1
102,792 + -1.1
102,841 + +2.2
102,849 - -0.5
102,849 - +1.4
102,922 + +0.6
102,929 - -0.9
102,945 + -2.4
103,000 + -1.3
103,000 + +1.6
103,008 - -0.5
103,015 - -3.6
103,028 + +3.6
103,036 - +1.1
103,080 + Dshi_0103 0.13 +1.9
103,091 + Dshi_0103 0.14 +0.2
103,152 - Dshi_0103 0.20 -1.5
103,240 + Dshi_0103 0.28 -3.3
103,248 - Dshi_0103 0.29 -0.8
103,264 + Dshi_0103 0.30 -1.7
103,362 - Dshi_0103 0.39 +1.5
103,395 + Dshi_0103 0.42 +1.4
103,454 + Dshi_0103 0.47 -0.3
103,530 - Dshi_0103 0.54 -1.6
103,584 + Dshi_0103 0.59 +0.2
103,592 - Dshi_0103 0.59 +1.4
103,652 + Dshi_0103 0.65 -2.1
103,665 + Dshi_0103 0.66 -3.9
103,696 - Dshi_0103 0.69 -0.6
103,711 + Dshi_0103 0.70 +1.0
103,744 - Dshi_0103 0.73 -1.9
103,772 - Dshi_0103 0.76 +0.1
103,918 + Dshi_0103 0.89 +0.2
103,979 + -0.6
103,987 - +0.7
104,044 - -0.4
104,060 + +1.1
104,060 + -1.1
104,068 - -0.7
104,092 - Dshi_0104 0.11 +0.1
104,092 - Dshi_0104 0.11 -0.5
104,132 - Dshi_0104 0.19 -3.9
104,194 + Dshi_0104 0.32 -1.1
104,194 - Dshi_0104 0.32 -1.7
104,202 - Dshi_0104 0.33 +5.1
104,229 + Dshi_0104 0.39 -0.2
104,272 - Dshi_0104 0.48 -1.7
104,308 + Dshi_0104 0.55 -0.2
104,308 + Dshi_0104 0.55 +1.9
104,308 + Dshi_0104 0.55 -0.4
104,310 + Dshi_0104 0.55 -1.6
104,388 + Dshi_0104 0.71 -3.0
104,489 - +0.5
104,647 + Dshi_0105 0.15 +1.3
104,666 - Dshi_0105 0.18 +4.8
104,666 - Dshi_0105 0.18 -0.3
104,694 - Dshi_0105 0.22 -0.5
104,731 + Dshi_0105 0.27 -1.2
104,830 + Dshi_0105 0.41 +0.2
104,867 + Dshi_0105 0.46 +1.2
104,960 - Dshi_0105 0.59 -1.4
105,007 - Dshi_0105 0.66 -1.5
105,007 - Dshi_0105 0.66 -1.3
105,007 - Dshi_0105 0.66 -0.6

Or see this region's nucleotide sequence