Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0102 and Dshi_0103 are separated by 105 nucleotides Dshi_0103 and Dshi_0104 overlap by 4 nucleotides Dshi_0104 and Dshi_0105 are separated by 11 nucleotides
Dshi_0102: Dshi_0102 - DNA polymerase III, alpha subunit (RefSeq), at 99,840 to 102,824
_0102
Dshi_0103: Dshi_0103 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 102,930 to 104,042
_0103
Dshi_0104: Dshi_0104 - GCN5-related N-acetyltransferase (RefSeq), at 104,039 to 104,527
_0104
Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249
_0105
Position (kb)
102
103
104
105 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 101.942 kb on + strand, within Dshi_0102 at 101.942 kb on + strand, within Dshi_0102 at 101.973 kb on - strand, within Dshi_0102 at 101.977 kb on + strand, within Dshi_0102 at 102.028 kb on - strand, within Dshi_0102 at 102.034 kb on - strand, within Dshi_0102 at 102.043 kb on + strand, within Dshi_0102 at 102.080 kb on + strand, within Dshi_0102 at 102.088 kb on - strand, within Dshi_0102 at 102.088 kb on - strand, within Dshi_0102 at 102.149 kb on - strand, within Dshi_0102 at 102.273 kb on + strand, within Dshi_0102 at 102.307 kb on + strand, within Dshi_0102 at 102.318 kb on - strand, within Dshi_0102 at 102.339 kb on + strand, within Dshi_0102 at 102.347 kb on + strand, within Dshi_0102 at 102.417 kb on + strand, within Dshi_0102 at 102.418 kb on - strand, within Dshi_0102 at 102.453 kb on + strand, within Dshi_0102 at 102.459 kb on + strand, within Dshi_0102 at 102.468 kb on + strand, within Dshi_0102 at 102.612 kb on - strand at 102.612 kb on - strand at 102.623 kb on - strand at 102.733 kb on - strand at 102.739 kb on + strand at 102.792 kb on + strand at 102.841 kb on + strand at 102.849 kb on - strand at 102.849 kb on - strand at 102.922 kb on + strand at 102.929 kb on - strand at 102.945 kb on + strand at 103.000 kb on + strand at 103.000 kb on + strand at 103.008 kb on - strand at 103.015 kb on - strand at 103.028 kb on + strand at 103.036 kb on - strand at 103.080 kb on + strand, within Dshi_0103 at 103.091 kb on + strand, within Dshi_0103 at 103.152 kb on - strand, within Dshi_0103 at 103.240 kb on + strand, within Dshi_0103 at 103.248 kb on - strand, within Dshi_0103 at 103.264 kb on + strand, within Dshi_0103 at 103.362 kb on - strand, within Dshi_0103 at 103.395 kb on + strand, within Dshi_0103 at 103.454 kb on + strand, within Dshi_0103 at 103.530 kb on - strand, within Dshi_0103 at 103.584 kb on + strand, within Dshi_0103 at 103.592 kb on - strand, within Dshi_0103 at 103.652 kb on + strand, within Dshi_0103 at 103.665 kb on + strand, within Dshi_0103 at 103.696 kb on - strand, within Dshi_0103 at 103.711 kb on + strand, within Dshi_0103 at 103.744 kb on - strand, within Dshi_0103 at 103.772 kb on - strand, within Dshi_0103 at 103.918 kb on + strand, within Dshi_0103 at 103.979 kb on + strand at 103.987 kb on - strand at 104.044 kb on - strand at 104.060 kb on + strand at 104.060 kb on + strand at 104.068 kb on - strand at 104.092 kb on - strand, within Dshi_0104 at 104.092 kb on - strand, within Dshi_0104 at 104.132 kb on - strand, within Dshi_0104 at 104.194 kb on + strand, within Dshi_0104 at 104.194 kb on - strand, within Dshi_0104 at 104.202 kb on - strand, within Dshi_0104 at 104.229 kb on + strand, within Dshi_0104 at 104.272 kb on - strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.308 kb on + strand, within Dshi_0104 at 104.310 kb on + strand, within Dshi_0104 at 104.388 kb on + strand, within Dshi_0104 at 104.489 kb on - strand at 104.647 kb on + strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.666 kb on - strand, within Dshi_0105 at 104.694 kb on - strand, within Dshi_0105 at 104.731 kb on + strand, within Dshi_0105 at 104.830 kb on + strand, within Dshi_0105 at 104.867 kb on + strand, within Dshi_0105 at 104.960 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 101,942 + Dshi_0102 0.70 -2.7 101,942 + Dshi_0102 0.70 +1.1 101,973 - Dshi_0102 0.71 +0.4 101,977 + Dshi_0102 0.72 -0.7 102,028 - Dshi_0102 0.73 +1.1 102,034 - Dshi_0102 0.74 -1.8 102,043 + Dshi_0102 0.74 +0.7 102,080 + Dshi_0102 0.75 -1.3 102,088 - Dshi_0102 0.75 +1.1 102,088 - Dshi_0102 0.75 +4.5 102,149 - Dshi_0102 0.77 +1.1 102,273 + Dshi_0102 0.82 +0.1 102,307 + Dshi_0102 0.83 -0.5 102,318 - Dshi_0102 0.83 +3.6 102,339 + Dshi_0102 0.84 -0.5 102,347 + Dshi_0102 0.84 +0.9 102,417 + Dshi_0102 0.86 -3.3 102,418 - Dshi_0102 0.86 -1.1 102,453 + Dshi_0102 0.88 -0.9 102,459 + Dshi_0102 0.88 -0.7 102,468 + Dshi_0102 0.88 -0.1 102,612 - +1.1 102,612 - -1.5 102,623 - -1.9 102,733 - -0.9 102,739 + -0.1 102,792 + -1.1 102,841 + +2.2 102,849 - -0.5 102,849 - +1.4 102,922 + +0.6 102,929 - -0.9 102,945 + -2.4 103,000 + -1.3 103,000 + +1.6 103,008 - -0.5 103,015 - -3.6 103,028 + +3.6 103,036 - +1.1 103,080 + Dshi_0103 0.13 +1.9 103,091 + Dshi_0103 0.14 +0.2 103,152 - Dshi_0103 0.20 -1.5 103,240 + Dshi_0103 0.28 -3.3 103,248 - Dshi_0103 0.29 -0.8 103,264 + Dshi_0103 0.30 -1.7 103,362 - Dshi_0103 0.39 +1.5 103,395 + Dshi_0103 0.42 +1.4 103,454 + Dshi_0103 0.47 -0.3 103,530 - Dshi_0103 0.54 -1.6 103,584 + Dshi_0103 0.59 +0.2 103,592 - Dshi_0103 0.59 +1.4 103,652 + Dshi_0103 0.65 -2.1 103,665 + Dshi_0103 0.66 -3.9 103,696 - Dshi_0103 0.69 -0.6 103,711 + Dshi_0103 0.70 +1.0 103,744 - Dshi_0103 0.73 -1.9 103,772 - Dshi_0103 0.76 +0.1 103,918 + Dshi_0103 0.89 +0.2 103,979 + -0.6 103,987 - +0.7 104,044 - -0.4 104,060 + +1.1 104,060 + -1.1 104,068 - -0.7 104,092 - Dshi_0104 0.11 +0.1 104,092 - Dshi_0104 0.11 -0.5 104,132 - Dshi_0104 0.19 -3.9 104,194 + Dshi_0104 0.32 -1.1 104,194 - Dshi_0104 0.32 -1.7 104,202 - Dshi_0104 0.33 +5.1 104,229 + Dshi_0104 0.39 -0.2 104,272 - Dshi_0104 0.48 -1.7 104,308 + Dshi_0104 0.55 -0.2 104,308 + Dshi_0104 0.55 +1.9 104,308 + Dshi_0104 0.55 -0.4 104,310 + Dshi_0104 0.55 -1.6 104,388 + Dshi_0104 0.71 -3.0 104,489 - +0.5 104,647 + Dshi_0105 0.15 +1.3 104,666 - Dshi_0105 0.18 +4.8 104,666 - Dshi_0105 0.18 -0.3 104,694 - Dshi_0105 0.22 -0.5 104,731 + Dshi_0105 0.27 -1.2 104,830 + Dshi_0105 0.41 +0.2 104,867 + Dshi_0105 0.46 +1.2 104,960 - Dshi_0105 0.59 -1.4 105,007 - Dshi_0105 0.66 -1.5 105,007 - Dshi_0105 0.66 -1.3 105,007 - Dshi_0105 0.66 -0.6
Or see this region's nucleotide sequence