Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0074

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0072 and Dshi_0073 are separated by 14 nucleotidesDshi_0073 and Dshi_0074 are separated by 99 nucleotidesDshi_0074 and Dshi_0075 are separated by 263 nucleotidesDshi_0075 and Dshi_0076 are separated by 392 nucleotides Dshi_0072: Dshi_0072 - putative anti-sigma regulatory factor, serine/threonine protein kinase (RefSeq), at 72,738 to 73,247 _0072 Dshi_0073: Dshi_0073 - anti-sigma-factor antagonist (RefSeq), at 73,262 to 73,594 _0073 Dshi_0074: Dshi_0074 - acetyl-CoA acetyltransferase (RefSeq), at 73,694 to 74,872 _0074 Dshi_0075: Dshi_0075 - hypothetical protein (RefSeq), at 75,136 to 75,378 _0075 Dshi_0076: Dshi_0076 - hypothetical protein (RefSeq), at 75,771 to 76,007 _0076 Position (kb) 73 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 72.756 kb on + strandat 72.759 kb on - strandat 72.855 kb on - strand, within Dshi_0072at 72.861 kb on - strand, within Dshi_0072at 72.902 kb on + strand, within Dshi_0072at 72.903 kb on + strand, within Dshi_0072at 72.908 kb on + strand, within Dshi_0072at 72.928 kb on + strand, within Dshi_0072at 73.005 kb on - strand, within Dshi_0072at 73.041 kb on - strand, within Dshi_0072at 73.041 kb on - strand, within Dshi_0072at 73.046 kb on - strand, within Dshi_0072at 73.056 kb on - strand, within Dshi_0072at 73.081 kb on - strand, within Dshi_0072at 73.099 kb on + strand, within Dshi_0072at 73.099 kb on + strand, within Dshi_0072at 73.117 kb on - strand, within Dshi_0072at 73.120 kb on + strand, within Dshi_0072at 73.157 kb on - strand, within Dshi_0072at 73.177 kb on + strand, within Dshi_0072at 73.210 kb on + strandat 73.210 kb on + strandat 73.210 kb on - strandat 73.212 kb on + strandat 73.218 kb on - strandat 73.392 kb on - strand, within Dshi_0073at 73.428 kb on - strand, within Dshi_0073at 73.454 kb on + strand, within Dshi_0073at 73.455 kb on - strand, within Dshi_0073at 73.469 kb on + strand, within Dshi_0073at 73.496 kb on + strand, within Dshi_0073at 73.538 kb on + strand, within Dshi_0073at 73.605 kb on + strandat 73.627 kb on + strandat 73.627 kb on + strandat 73.629 kb on - strandat 73.635 kb on - strandat 73.732 kb on + strandat 73.777 kb on + strandat 73.964 kb on + strand, within Dshi_0074at 73.972 kb on - strand, within Dshi_0074at 74.141 kb on - strand, within Dshi_0074at 74.150 kb on + strand, within Dshi_0074at 74.152 kb on - strand, within Dshi_0074at 74.216 kb on + strand, within Dshi_0074at 74.224 kb on - strand, within Dshi_0074at 74.373 kb on - strand, within Dshi_0074at 74.398 kb on - strand, within Dshi_0074at 74.482 kb on + strand, within Dshi_0074at 74.482 kb on + strand, within Dshi_0074at 74.498 kb on - strand, within Dshi_0074at 74.537 kb on + strand, within Dshi_0074at 74.734 kb on - strand, within Dshi_0074at 74.784 kb on + strandat 74.784 kb on - strandat 74.976 kb on + strandat 74.976 kb on + strandat 74.986 kb on + strandat 75.102 kb on + strandat 75.119 kb on + strandat 75.191 kb on - strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.259 kb on - strand, within Dshi_0075at 75.278 kb on - strand, within Dshi_0075at 75.293 kb on - strand, within Dshi_0075at 75.333 kb on - strand, within Dshi_0075at 75.411 kb on - strandat 75.418 kb on - strandat 75.421 kb on - strandat 75.451 kb on + strandat 75.459 kb on - strandat 75.502 kb on - strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.553 kb on + strandat 75.575 kb on + strandat 75.583 kb on - strandat 75.685 kb on - strandat 75.807 kb on + strand, within Dshi_0076at 75.832 kb on + strand, within Dshi_0076at 75.837 kb on + strand, within Dshi_0076at 75.840 kb on - strand, within Dshi_0076at 75.845 kb on - strand, within Dshi_0076

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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72,756 + +1.1
72,759 - -0.4
72,855 - Dshi_0072 0.23 -1.3
72,861 - Dshi_0072 0.24 -1.5
72,902 + Dshi_0072 0.32 -1.3
72,903 + Dshi_0072 0.32 +1.1
72,908 + Dshi_0072 0.33 +1.5
72,928 + Dshi_0072 0.37 +0.1
73,005 - Dshi_0072 0.52 -3.3
73,041 - Dshi_0072 0.59 -2.1
73,041 - Dshi_0072 0.59 -0.7
73,046 - Dshi_0072 0.60 -2.6
73,056 - Dshi_0072 0.62 +1.1
73,081 - Dshi_0072 0.67 +1.3
73,099 + Dshi_0072 0.71 +0.1
73,099 + Dshi_0072 0.71 +0.1
73,117 - Dshi_0072 0.74 -1.3
73,120 + Dshi_0072 0.75 -1.2
73,157 - Dshi_0072 0.82 -0.9
73,177 + Dshi_0072 0.86 -1.4
73,210 + -0.9
73,210 + -0.9
73,210 - -0.5
73,212 + -2.1
73,218 - +0.1
73,392 - Dshi_0073 0.39 +1.1
73,428 - Dshi_0073 0.50 +1.1
73,454 + Dshi_0073 0.58 +1.1
73,455 - Dshi_0073 0.58 +1.1
73,469 + Dshi_0073 0.62 +0.3
73,496 + Dshi_0073 0.70 -2.1
73,538 + Dshi_0073 0.83 -2.5
73,605 + -0.5
73,627 + -0.5
73,627 + +3.1
73,629 - -0.9
73,635 - -2.1
73,732 + -0.5
73,777 + -1.9
73,964 + Dshi_0074 0.23 -1.5
73,972 - Dshi_0074 0.24 +0.9
74,141 - Dshi_0074 0.38 +1.6
74,150 + Dshi_0074 0.39 +1.1
74,152 - Dshi_0074 0.39 +0.1
74,216 + Dshi_0074 0.44 -1.7
74,224 - Dshi_0074 0.45 +0.1
74,373 - Dshi_0074 0.58 -2.4
74,398 - Dshi_0074 0.60 -0.4
74,482 + Dshi_0074 0.67 +2.5
74,482 + Dshi_0074 0.67 -2.9
74,498 - Dshi_0074 0.68 +0.6
74,537 + Dshi_0074 0.72 -0.4
74,734 - Dshi_0074 0.88 +0.2
74,784 + -0.2
74,784 - +1.1
74,976 + -0.5
74,976 + -0.9
74,986 + -2.7
75,102 + +0.2
75,119 + -4.2
75,191 - Dshi_0075 0.23 -0.9
75,246 + Dshi_0075 0.45 -0.5
75,246 + Dshi_0075 0.45 -2.1
75,259 - Dshi_0075 0.51 +0.5
75,278 - Dshi_0075 0.58 +2.1
75,293 - Dshi_0075 0.65 -1.7
75,333 - Dshi_0075 0.81 -2.5
75,411 - -0.7
75,418 - +2.9
75,421 - +0.1
75,451 + -2.1
75,459 - -1.3
75,502 - -0.3
75,508 + -2.1
75,508 + -2.1
75,508 + -0.3
75,508 + +1.1
75,553 + +1.3
75,575 + +1.1
75,583 - +0.8
75,685 - -0.9
75,807 + Dshi_0076 0.15 -2.2
75,832 + Dshi_0076 0.26 -1.3
75,837 + Dshi_0076 0.28 -0.8
75,840 - Dshi_0076 0.29 +1.2
75,845 - Dshi_0076 0.31 -1.7

Or see this region's nucleotide sequence