Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0069

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0067 and Dshi_0068 are separated by 4 nucleotidesDshi_0068 and Dshi_0069 are separated by 76 nucleotidesDshi_0069 and Dshi_0070 are separated by 86 nucleotidesDshi_0070 and Dshi_0071 are separated by 47 nucleotides Dshi_0067: Dshi_0067 - Enoyl-CoA hydratase/isomerase (RefSeq), at 68,339 to 69,085 _0067 Dshi_0068: Dshi_0068 - lipoprotein, putative (RefSeq), at 69,090 to 69,674 _0068 Dshi_0069: Dshi_0069 - Auxin Efflux Carrier (RefSeq), at 69,751 to 70,632 _0069 Dshi_0070: Dshi_0070 - hemimethylated DNA binding protein (RefSeq), at 70,719 to 71,045 _0070 Dshi_0071: Dshi_0071 - Gamma-glutamyltransferase (RefSeq), at 71,093 to 72,676 _0071 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 68.772 kb on - strand, within Dshi_0067at 68.935 kb on + strand, within Dshi_0067at 69.411 kb on - strand, within Dshi_0068at 69.776 kb on + strandat 69.810 kb on + strandat 69.813 kb on - strandat 69.825 kb on - strandat 69.855 kb on - strand, within Dshi_0069at 69.960 kb on - strand, within Dshi_0069at 70.010 kb on + strand, within Dshi_0069at 70.064 kb on + strand, within Dshi_0069at 70.157 kb on - strand, within Dshi_0069at 70.159 kb on + strand, within Dshi_0069at 70.262 kb on + strand, within Dshi_0069at 70.270 kb on - strand, within Dshi_0069at 70.414 kb on + strand, within Dshi_0069at 70.439 kb on - strand, within Dshi_0069at 70.441 kb on + strand, within Dshi_0069at 70.449 kb on - strand, within Dshi_0069at 70.478 kb on - strand, within Dshi_0069at 70.489 kb on - strand, within Dshi_0069at 70.507 kb on + strand, within Dshi_0069at 70.507 kb on + strand, within Dshi_0069at 70.539 kb on + strand, within Dshi_0069at 70.562 kb on - strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.606 kb on + strandat 70.624 kb on - strandat 70.668 kb on + strandat 70.671 kb on - strandat 70.729 kb on - strandat 70.879 kb on + strand, within Dshi_0070at 71.067 kb on - strandat 71.125 kb on + strandat 71.287 kb on + strand, within Dshi_0071at 71.411 kb on - strand, within Dshi_0071at 71.501 kb on + strand, within Dshi_0071

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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68,772 - Dshi_0067 0.58 -0.5
68,935 + Dshi_0067 0.80 -1.0
69,411 - Dshi_0068 0.55 -1.5
69,776 + +0.8
69,810 + -2.1
69,813 - +0.1
69,825 - +1.1
69,855 - Dshi_0069 0.12 -2.1
69,960 - Dshi_0069 0.24 +1.1
70,010 + Dshi_0069 0.29 -2.6
70,064 + Dshi_0069 0.35 -0.5
70,157 - Dshi_0069 0.46 -0.9
70,159 + Dshi_0069 0.46 +0.1
70,262 + Dshi_0069 0.58 -0.4
70,270 - Dshi_0069 0.59 +2.1
70,414 + Dshi_0069 0.75 -0.9
70,439 - Dshi_0069 0.78 -0.5
70,441 + Dshi_0069 0.78 -1.3
70,449 - Dshi_0069 0.79 -0.9
70,478 - Dshi_0069 0.82 -2.6
70,489 - Dshi_0069 0.84 -3.7
70,507 + Dshi_0069 0.86 -1.5
70,507 + Dshi_0069 0.86 -2.1
70,539 + Dshi_0069 0.89 -1.5
70,562 - +1.4
70,606 + +1.9
70,606 + +4.5
70,606 + -0.5
70,624 - +0.1
70,668 + +1.1
70,671 - -2.4
70,729 - -2.4
70,879 + Dshi_0070 0.49 +2.6
71,067 - -0.8
71,125 + +2.3
71,287 + Dshi_0071 0.12 +2.4
71,411 - Dshi_0071 0.20 -1.5
71,501 + Dshi_0071 0.26 -0.3

Or see this region's nucleotide sequence