Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0065

Experiment: m.b. Chlorate 40 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0064 and Dshi_0065 are separated by 77 nucleotidesDshi_0065 and Dshi_0066 are separated by 115 nucleotidesDshi_0066 and Dshi_0067 overlap by 4 nucleotides Dshi_0064: Dshi_0064 - peptidase U62 modulator of DNA gyrase (RefSeq), at 64,554 to 65,900 _0064 Dshi_0065: Dshi_0065 - hypothetical protein (RefSeq), at 65,978 to 67,468 _0065 Dshi_0066: Dshi_0066 - short-chain dehydrogenase/reductase SDR (RefSeq), at 67,584 to 68,342 _0066 Dshi_0067: Dshi_0067 - Enoyl-CoA hydratase/isomerase (RefSeq), at 68,339 to 69,085 _0067 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 65.082 kb on - strand, within Dshi_0064at 65.240 kb on + strand, within Dshi_0064at 65.319 kb on + strand, within Dshi_0064at 65.486 kb on - strand, within Dshi_0064at 65.696 kb on - strand, within Dshi_0064at 65.865 kb on - strandat 65.882 kb on - strandat 65.939 kb on - strandat 66.085 kb on - strandat 66.096 kb on + strandat 66.132 kb on + strand, within Dshi_0065at 66.318 kb on + strand, within Dshi_0065at 66.475 kb on - strand, within Dshi_0065at 66.673 kb on - strand, within Dshi_0065at 66.817 kb on - strand, within Dshi_0065at 66.990 kb on - strand, within Dshi_0065at 67.067 kb on + strand, within Dshi_0065at 67.077 kb on + strand, within Dshi_0065at 67.080 kb on - strand, within Dshi_0065at 67.104 kb on + strand, within Dshi_0065at 67.104 kb on + strand, within Dshi_0065at 67.126 kb on + strandat 67.135 kb on - strand, within Dshi_0065at 67.242 kb on - strand, within Dshi_0065at 67.365 kb on + strandat 67.366 kb on + strandat 67.373 kb on - strandat 67.395 kb on - strandat 67.406 kb on - strandat 67.417 kb on - strandat 67.456 kb on + strandat 67.474 kb on - strandat 67.527 kb on - strandat 67.531 kb on + strandat 67.531 kb on + strandat 67.537 kb on - strandat 67.553 kb on - strandat 67.563 kb on + strandat 67.578 kb on - strandat 67.748 kb on + strand, within Dshi_0066at 67.748 kb on + strand, within Dshi_0066at 67.748 kb on + strand, within Dshi_0066at 67.810 kb on - strandat 67.810 kb on - strand, within Dshi_0066at 67.851 kb on - strand, within Dshi_0066at 67.920 kb on - strand, within Dshi_0066at 67.931 kb on + strand, within Dshi_0066at 68.208 kb on + strand, within Dshi_0066at 68.251 kb on - strand, within Dshi_0066at 68.393 kb on + strandat 68.398 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM
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65,082 - Dshi_0064 0.39 -0.1
65,240 + Dshi_0064 0.51 +1.9
65,319 + Dshi_0064 0.57 +0.1
65,486 - Dshi_0064 0.69 +0.4
65,696 - Dshi_0064 0.85 -0.9
65,865 - +0.1
65,882 - +2.1
65,939 - -1.3
66,085 - -0.2
66,096 + +1.1
66,132 + Dshi_0065 0.10 +1.1
66,318 + Dshi_0065 0.23 +0.1
66,475 - Dshi_0065 0.33 -1.3
66,673 - Dshi_0065 0.47 +0.1
66,817 - Dshi_0065 0.56 -1.7
66,990 - Dshi_0065 0.68 -1.9
67,067 + Dshi_0065 0.73 -0.9
67,077 + Dshi_0065 0.74 -2.3
67,080 - Dshi_0065 0.74 +1.1
67,104 + Dshi_0065 0.76 -1.3
67,104 + Dshi_0065 0.76 -1.3
67,126 + +0.5
67,135 - Dshi_0065 0.78 +1.3
67,242 - Dshi_0065 0.85 -1.9
67,365 + -0.2
67,366 + +0.1
67,373 - +0.1
67,395 - +1.1
67,406 - +1.1
67,417 - -3.6
67,456 + -2.6
67,474 - -2.8
67,527 - +0.1
67,531 + -0.4
67,531 + +0.1
67,537 - +2.1
67,553 - +1.1
67,563 + -1.4
67,578 - -0.2
67,748 + Dshi_0066 0.22 -1.0
67,748 + Dshi_0066 0.22 +1.5
67,748 + Dshi_0066 0.22 +1.8
67,810 - +1.1
67,810 - Dshi_0066 0.30 +0.1
67,851 - Dshi_0066 0.35 -0.5
67,920 - Dshi_0066 0.44 -1.0
67,931 + Dshi_0066 0.46 -0.5
68,208 + Dshi_0066 0.82 -1.1
68,251 - Dshi_0066 0.88 +3.6
68,393 + -0.8
68,398 + +0.5

Or see this region's nucleotide sequence