Experiment: m.b. Chlorate 40 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0016 and Dshi_0017 are separated by 89 nucleotides Dshi_0017 and Dshi_0018 are separated by 159 nucleotides
Dshi_0016: Dshi_0016 - lytic murein transglycosylase (RefSeq), at 18,179 to 19,426
_0016
Dshi_0017: Dshi_0017 - hypothetical protein (RefSeq), at 19,516 to 20,166
_0017
Dshi_0018: Dshi_0018 - multicopper oxidase type 2 (RefSeq), at 20,326 to 22,629
_0018
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 18.532 kb on + strand, within Dshi_0016 at 18.611 kb on + strand, within Dshi_0016 at 18.768 kb on + strand, within Dshi_0016 at 18.769 kb on + strand, within Dshi_0016 at 18.770 kb on - strand, within Dshi_0016 at 18.791 kb on - strand, within Dshi_0016 at 18.883 kb on + strand, within Dshi_0016 at 18.931 kb on + strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.939 kb on - strand, within Dshi_0016 at 18.975 kb on + strand, within Dshi_0016 at 19.150 kb on + strand, within Dshi_0016 at 19.152 kb on - strand at 19.181 kb on + strand, within Dshi_0016 at 19.218 kb on - strand, within Dshi_0016 at 19.223 kb on + strand, within Dshi_0016 at 19.257 kb on - strand, within Dshi_0016 at 19.361 kb on - strand at 19.368 kb on + strand at 19.376 kb on - strand at 19.389 kb on + strand at 19.477 kb on + strand at 19.498 kb on + strand at 19.506 kb on - strand at 19.599 kb on - strand, within Dshi_0017 at 19.680 kb on - strand, within Dshi_0017 at 19.924 kb on + strand, within Dshi_0017 at 20.047 kb on - strand, within Dshi_0017 at 20.071 kb on - strand, within Dshi_0017 at 20.112 kb on + strand at 20.120 kb on - strand at 20.172 kb on - strand at 20.270 kb on - strand at 20.373 kb on + strand at 20.415 kb on + strand at 20.525 kb on - strand at 20.543 kb on - strand at 20.569 kb on + strand, within Dshi_0018 at 20.585 kb on - strand, within Dshi_0018 at 20.632 kb on - strand, within Dshi_0018 at 20.764 kb on + strand, within Dshi_0018 at 20.772 kb on - strand, within Dshi_0018 at 20.793 kb on + strand at 20.800 kb on + strand, within Dshi_0018 at 20.925 kb on + strand, within Dshi_0018 at 20.930 kb on + strand, within Dshi_0018 at 20.940 kb on + strand, within Dshi_0018 at 20.998 kb on + strand, within Dshi_0018 at 21.033 kb on - strand, within Dshi_0018 at 21.092 kb on - strand, within Dshi_0018 at 21.122 kb on - strand, within Dshi_0018
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorate 40 mM remove 18,532 + Dshi_0016 0.28 -0.9 18,611 + Dshi_0016 0.35 +0.3 18,768 + Dshi_0016 0.47 -1.1 18,769 + Dshi_0016 0.47 -2.5 18,770 - Dshi_0016 0.47 +1.1 18,791 - Dshi_0016 0.49 -2.6 18,883 + Dshi_0016 0.56 -2.1 18,931 + Dshi_0016 0.60 -2.8 18,939 - Dshi_0016 0.61 +0.9 18,939 - Dshi_0016 0.61 -2.4 18,939 - Dshi_0016 0.61 -0.5 18,975 + Dshi_0016 0.64 +1.1 19,150 + Dshi_0016 0.78 -0.6 19,152 - +1.1 19,181 + Dshi_0016 0.80 -1.4 19,218 - Dshi_0016 0.83 +1.1 19,223 + Dshi_0016 0.84 -2.4 19,257 - Dshi_0016 0.86 -2.6 19,361 - +0.1 19,368 + +3.9 19,376 - +1.8 19,389 + -0.5 19,477 + +3.4 19,498 + +2.1 19,506 - +0.7 19,599 - Dshi_0017 0.13 -3.6 19,680 - Dshi_0017 0.25 +2.6 19,924 + Dshi_0017 0.63 -0.9 20,047 - Dshi_0017 0.82 +1.1 20,071 - Dshi_0017 0.85 +2.1 20,112 + -1.9 20,120 - -1.3 20,172 - -2.9 20,270 - +0.1 20,373 + +2.1 20,415 + +0.1 20,525 - -0.5 20,543 - -1.6 20,569 + Dshi_0018 0.11 -1.3 20,585 - Dshi_0018 0.11 +0.5 20,632 - Dshi_0018 0.13 +1.1 20,764 + Dshi_0018 0.19 +1.1 20,772 - Dshi_0018 0.19 +1.1 20,793 + +1.1 20,800 + Dshi_0018 0.21 -0.5 20,925 + Dshi_0018 0.26 +1.1 20,930 + Dshi_0018 0.26 +3.4 20,940 + Dshi_0018 0.27 +0.1 20,998 + Dshi_0018 0.29 +1.1 21,033 - Dshi_0018 0.31 +0.5 21,092 - Dshi_0018 0.33 -0.9 21,122 - Dshi_0018 0.35 -0.9
Or see this region's nucleotide sequence