Strain Fitness in Marinobacter adhaerens HP15 around HP15_4115

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4113 and HP15_4114 overlap by 4 nucleotidesHP15_4114 and HP15_4115 are separated by 94 nucleotidesHP15_4115 and HP15_4116 are separated by 106 nucleotidesHP15_4116 and HP15_4117 are separated by 97 nucleotidesHP15_4117 and HP15_4118 overlap by 4 nucleotides HP15_4113: HP15_4113 - hypothetical protein, at 4,348,722 to 4,349,315 _4113 HP15_4114: HP15_4114 - hypothetical protein, at 4,349,312 to 4,349,563 _4114 HP15_4115: HP15_4115 - sensory box/GGDEF/EAL family protein, at 4,349,658 to 4,352,093 _4115 HP15_4116: HP15_4116 - SirA-like protein, at 4,352,200 to 4,352,334 _4116 HP15_4117: HP15_4117 - membrane or secreted protein, at 4,352,432 to 4,352,560 _4117 HP15_4118: HP15_4118 - formate dehydrogenase, gamma subunit, at 4,352,557 to 4,353,600 _4118 Position (kb) 4349 4350 4351 4352 4353Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4348.987 kb on + strand, within HP15_4113at 4349.047 kb on - strand, within HP15_4113at 4349.047 kb on - strand, within HP15_4113at 4349.125 kb on - strand, within HP15_4113at 4349.135 kb on + strand, within HP15_4113at 4349.278 kb on + strandat 4349.278 kb on + strandat 4349.303 kb on - strandat 4349.316 kb on + strandat 4349.409 kb on - strand, within HP15_4114at 4349.429 kb on + strand, within HP15_4114at 4349.445 kb on + strand, within HP15_4114at 4349.453 kb on - strand, within HP15_4114at 4349.590 kb on - strandat 4349.607 kb on - strandat 4349.648 kb on - strandat 4349.733 kb on + strandat 4349.782 kb on + strandat 4349.998 kb on - strand, within HP15_4115at 4350.107 kb on - strand, within HP15_4115at 4350.283 kb on + strand, within HP15_4115at 4350.291 kb on - strand, within HP15_4115at 4350.291 kb on - strand, within HP15_4115at 4350.369 kb on - strand, within HP15_4115at 4350.401 kb on - strand, within HP15_4115at 4350.403 kb on + strand, within HP15_4115at 4350.592 kb on - strand, within HP15_4115at 4350.643 kb on + strand, within HP15_4115at 4350.681 kb on - strand, within HP15_4115at 4350.709 kb on + strand, within HP15_4115at 4350.717 kb on - strand, within HP15_4115at 4350.717 kb on - strand, within HP15_4115at 4350.805 kb on - strand, within HP15_4115at 4350.840 kb on + strand, within HP15_4115at 4350.840 kb on + strand, within HP15_4115at 4350.888 kb on - strand, within HP15_4115at 4350.930 kb on + strand, within HP15_4115at 4350.991 kb on - strand, within HP15_4115at 4351.040 kb on - strand, within HP15_4115at 4351.040 kb on - strand, within HP15_4115at 4351.374 kb on + strand, within HP15_4115at 4351.374 kb on + strand, within HP15_4115at 4351.382 kb on - strand, within HP15_4115at 4351.382 kb on - strand, within HP15_4115at 4351.382 kb on - strand, within HP15_4115at 4351.392 kb on + strand, within HP15_4115at 4351.488 kb on + strand, within HP15_4115at 4351.528 kb on - strand, within HP15_4115at 4351.605 kb on - strand, within HP15_4115at 4351.605 kb on - strand, within HP15_4115at 4351.668 kb on + strand, within HP15_4115at 4351.676 kb on - strand, within HP15_4115at 4351.676 kb on - strand, within HP15_4115at 4351.748 kb on + strand, within HP15_4115at 4351.756 kb on - strand, within HP15_4115at 4351.943 kb on + strandat 4351.943 kb on + strandat 4351.948 kb on + strandat 4351.951 kb on - strandat 4351.951 kb on - strandat 4351.951 kb on - strandat 4351.984 kb on - strandat 4352.014 kb on + strandat 4352.042 kb on + strandat 4352.089 kb on - strandat 4352.163 kb on + strandat 4352.224 kb on + strand, within HP15_4116at 4352.295 kb on + strand, within HP15_4116at 4352.344 kb on + strandat 4352.395 kb on - strandat 4352.395 kb on - strandat 4352.395 kb on - strandat 4352.420 kb on + strandat 4352.420 kb on + strandat 4352.420 kb on + strandat 4352.428 kb on - strandat 4352.433 kb on - strandat 4352.457 kb on + strand, within HP15_4117at 4352.465 kb on - strand, within HP15_4117at 4352.684 kb on - strand, within HP15_4118at 4352.713 kb on - strand, within HP15_4118at 4352.738 kb on - strand, within HP15_4118at 4352.857 kb on - strand, within HP15_4118at 4352.971 kb on + strand, within HP15_4118at 4353.019 kb on + strand, within HP15_4118at 4353.051 kb on - strand, within HP15_4118

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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4,348,987 + HP15_4113 0.45 -0.7
4,349,047 - HP15_4113 0.55 -0.3
4,349,047 - HP15_4113 0.55 -1.0
4,349,125 - HP15_4113 0.68 +1.7
4,349,135 + HP15_4113 0.70 +1.3
4,349,278 + +0.3
4,349,278 + +1.6
4,349,303 - +0.5
4,349,316 + +0.2
4,349,409 - HP15_4114 0.38 +0.0
4,349,429 + HP15_4114 0.46 +1.8
4,349,445 + HP15_4114 0.53 +0.1
4,349,453 - HP15_4114 0.56 +1.7
4,349,590 - +1.0
4,349,607 - -0.2
4,349,648 - -0.4
4,349,733 + +0.3
4,349,782 + -0.1
4,349,998 - HP15_4115 0.14 -0.8
4,350,107 - HP15_4115 0.18 -0.1
4,350,283 + HP15_4115 0.26 +1.4
4,350,291 - HP15_4115 0.26 +2.0
4,350,291 - HP15_4115 0.26 +1.8
4,350,369 - HP15_4115 0.29 +0.1
4,350,401 - HP15_4115 0.31 +1.1
4,350,403 + HP15_4115 0.31 -0.1
4,350,592 - HP15_4115 0.38 -0.6
4,350,643 + HP15_4115 0.40 +1.2
4,350,681 - HP15_4115 0.42 +1.9
4,350,709 + HP15_4115 0.43 +1.5
4,350,717 - HP15_4115 0.43 +0.8
4,350,717 - HP15_4115 0.43 +1.2
4,350,805 - HP15_4115 0.47 +2.6
4,350,840 + HP15_4115 0.49 +0.0
4,350,840 + HP15_4115 0.49 +0.2
4,350,888 - HP15_4115 0.50 +0.2
4,350,930 + HP15_4115 0.52 -0.4
4,350,991 - HP15_4115 0.55 -0.3
4,351,040 - HP15_4115 0.57 +1.5
4,351,040 - HP15_4115 0.57 -0.5
4,351,374 + HP15_4115 0.70 +2.0
4,351,374 + HP15_4115 0.70 +0.3
4,351,382 - HP15_4115 0.71 -0.1
4,351,382 - HP15_4115 0.71 +0.1
4,351,382 - HP15_4115 0.71 +1.9
4,351,392 + HP15_4115 0.71 +2.1
4,351,488 + HP15_4115 0.75 +2.3
4,351,528 - HP15_4115 0.77 +1.7
4,351,605 - HP15_4115 0.80 -0.0
4,351,605 - HP15_4115 0.80 +3.4
4,351,668 + HP15_4115 0.83 -0.4
4,351,676 - HP15_4115 0.83 +1.0
4,351,676 - HP15_4115 0.83 -1.0
4,351,748 + HP15_4115 0.86 -0.3
4,351,756 - HP15_4115 0.86 -0.0
4,351,943 + +0.5
4,351,943 + -1.2
4,351,948 + +1.4
4,351,951 - -0.0
4,351,951 - -0.5
4,351,951 - +0.9
4,351,984 - +1.9
4,352,014 + -0.9
4,352,042 + +1.7
4,352,089 - -0.3
4,352,163 + +1.4
4,352,224 + HP15_4116 0.18 -2.8
4,352,295 + HP15_4116 0.70 +0.1
4,352,344 + -0.2
4,352,395 - +0.3
4,352,395 - -0.2
4,352,395 - -0.8
4,352,420 + +1.9
4,352,420 + -0.9
4,352,420 + +1.8
4,352,428 - -1.1
4,352,433 - +1.3
4,352,457 + HP15_4117 0.19 +0.1
4,352,465 - HP15_4117 0.26 +1.8
4,352,684 - HP15_4118 0.12 -0.4
4,352,713 - HP15_4118 0.15 -0.5
4,352,738 - HP15_4118 0.17 +1.8
4,352,857 - HP15_4118 0.29 +0.5
4,352,971 + HP15_4118 0.40 +1.8
4,353,019 + HP15_4118 0.44 +0.4
4,353,051 - HP15_4118 0.47 +1.3

Or see this region's nucleotide sequence