Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4023 and HP15_4024 are separated by 382 nucleotides HP15_4024 and HP15_4025 are separated by 50 nucleotides HP15_4025 and HP15_4026 overlap by 4 nucleotides HP15_4026 and HP15_4027 are separated by 14 nucleotides
HP15_4023: HP15_4023 - helix-turn-helix, Fis-type, at 4,260,364 to 4,262,070
_4023
HP15_4024: HP15_4024 - phenol hydroxylase subunit, at 4,262,453 to 4,262,713
_4024
HP15_4025: HP15_4025 - phenol hydroxylase component, at 4,262,764 to 4,263,765
_4025
HP15_4026: HP15_4026 - monooxygenase component MmoB/DmpM, at 4,263,762 to 4,264,031
_4026
HP15_4027: HP15_4027 - phenol hydroxylase oxygenase component, at 4,264,046 to 4,265,593
_4027
Position (kb) 4262
4263
4264 Strain fitness (log2 ratio) -1
0
1
2 at 4261.784 kb on - strand, within HP15_4023 at 4261.844 kb on - strand, within HP15_4023 at 4261.901 kb on - strand at 4262.093 kb on + strand at 4262.098 kb on + strand at 4262.106 kb on - strand at 4262.116 kb on + strand at 4262.124 kb on - strand at 4262.313 kb on - strand at 4262.402 kb on - strand at 4262.524 kb on + strand, within HP15_4024 at 4262.559 kb on + strand, within HP15_4024 at 4262.620 kb on + strand, within HP15_4024 at 4262.620 kb on + strand, within HP15_4024 at 4262.810 kb on + strand at 4263.008 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.064 kb on - strand, within HP15_4025 at 4263.154 kb on - strand, within HP15_4025 at 4263.256 kb on - strand, within HP15_4025 at 4263.274 kb on + strand, within HP15_4025 at 4263.323 kb on - strand, within HP15_4025 at 4263.409 kb on - strand, within HP15_4025 at 4263.412 kb on + strand, within HP15_4025 at 4263.508 kb on - strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.530 kb on + strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.538 kb on - strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.552 kb on + strand, within HP15_4025 at 4263.604 kb on - strand, within HP15_4025 at 4263.754 kb on - strand at 4263.938 kb on + strand, within HP15_4026 at 4264.115 kb on + strand at 4264.149 kb on - strand at 4264.288 kb on + strand, within HP15_4027 at 4264.369 kb on - strand, within HP15_4027 at 4264.384 kb on + strand, within HP15_4027 at 4264.397 kb on - strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.408 kb on + strand, within HP15_4027 at 4264.445 kb on - strand, within HP15_4027 at 4264.472 kb on - strand, within HP15_4027 at 4264.518 kb on - strand, within HP15_4027 at 4264.665 kb on - strand, within HP15_4027 at 4264.743 kb on - strand, within HP15_4027 at 4264.764 kb on + strand, within HP15_4027
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 4,261,784 - HP15_4023 0.83 +0.6 4,261,844 - HP15_4023 0.87 -0.1 4,261,901 - +1.7 4,262,093 + +1.7 4,262,098 + -0.5 4,262,106 - +0.2 4,262,116 + +0.1 4,262,124 - -0.2 4,262,313 - -0.7 4,262,402 - -0.3 4,262,524 + HP15_4024 0.27 +1.8 4,262,559 + HP15_4024 0.41 -0.6 4,262,620 + HP15_4024 0.64 +1.2 4,262,620 + HP15_4024 0.64 +1.6 4,262,810 + +1.1 4,263,008 - HP15_4025 0.24 +1.4 4,263,064 - HP15_4025 0.30 +0.4 4,263,064 - HP15_4025 0.30 +0.1 4,263,154 - HP15_4025 0.39 +1.6 4,263,256 - HP15_4025 0.49 -0.5 4,263,274 + HP15_4025 0.51 -0.5 4,263,323 - HP15_4025 0.56 +2.2 4,263,409 - HP15_4025 0.64 +1.5 4,263,412 + HP15_4025 0.65 -0.8 4,263,508 - HP15_4025 0.74 +0.3 4,263,530 + HP15_4025 0.76 +0.3 4,263,530 + HP15_4025 0.76 +0.7 4,263,538 - HP15_4025 0.77 -0.8 4,263,538 - HP15_4025 0.77 +1.8 4,263,538 - HP15_4025 0.77 +1.2 4,263,552 + HP15_4025 0.79 -0.4 4,263,552 + HP15_4025 0.79 +1.6 4,263,604 - HP15_4025 0.84 -1.6 4,263,754 - -0.1 4,263,938 + HP15_4026 0.65 +2.3 4,264,115 + +1.5 4,264,149 - -0.2 4,264,288 + HP15_4027 0.16 +1.1 4,264,369 - HP15_4027 0.21 +1.5 4,264,384 + HP15_4027 0.22 -0.3 4,264,397 - HP15_4027 0.23 +2.5 4,264,408 + HP15_4027 0.23 +1.3 4,264,408 + HP15_4027 0.23 +1.4 4,264,445 - HP15_4027 0.26 -0.4 4,264,472 - HP15_4027 0.28 +0.3 4,264,518 - HP15_4027 0.30 +0.0 4,264,665 - HP15_4027 0.40 -0.6 4,264,743 - HP15_4027 0.45 +0.1 4,264,764 + HP15_4027 0.46 -0.2
Or see this region's nucleotide sequence