Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3213 and HP15_3214 are separated by 148 nucleotides HP15_3214 and HP15_3215 are separated by 119 nucleotides HP15_3215 and HP15_3216 are separated by 510 nucleotides
HP15_3213: HP15_3213 - threonine dehydratase biosynthetic, at 3,363,108 to 3,364,643
_3213
HP15_3214: HP15_3214 - ribose-5-phosphate isomerase A, at 3,364,792 to 3,365,475
_3214
HP15_3215: HP15_3215 - acyl-CoA dehydrogenase domain protein, at 3,365,595 to 3,366,761
_3215
HP15_3216: HP15_3216 - inorganic diphosphatase, at 3,367,272 to 3,367,799
_3216
Position (kb)
3365
3366
3367 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3364.672 kb on + strand at 3364.747 kb on - strand at 3365.612 kb on + strand at 3365.616 kb on - strand at 3365.721 kb on - strand, within HP15_3215 at 3365.721 kb on - strand, within HP15_3215 at 3365.811 kb on - strand, within HP15_3215 at 3365.883 kb on + strand, within HP15_3215 at 3365.883 kb on + strand, within HP15_3215 at 3365.891 kb on - strand, within HP15_3215 at 3365.891 kb on - strand, within HP15_3215 at 3365.891 kb on - strand, within HP15_3215 at 3365.891 kb on - strand, within HP15_3215 at 3365.941 kb on + strand, within HP15_3215 at 3365.941 kb on + strand, within HP15_3215 at 3365.949 kb on - strand, within HP15_3215 at 3365.997 kb on - strand, within HP15_3215 at 3366.032 kb on + strand, within HP15_3215 at 3366.032 kb on + strand, within HP15_3215 at 3366.116 kb on + strand, within HP15_3215 at 3366.116 kb on + strand, within HP15_3215 at 3366.124 kb on - strand, within HP15_3215 at 3366.193 kb on - strand, within HP15_3215 at 3366.377 kb on - strand at 3366.379 kb on - strand, within HP15_3215 at 3366.415 kb on - strand, within HP15_3215 at 3366.509 kb on + strand, within HP15_3215 at 3366.591 kb on + strand, within HP15_3215 at 3366.632 kb on - strand, within HP15_3215 at 3366.645 kb on + strand at 3366.755 kb on + strand at 3366.763 kb on - strand at 3366.783 kb on + strand at 3366.791 kb on - strand at 3366.793 kb on + strand at 3366.803 kb on + strand at 3366.917 kb on + strand at 3366.928 kb on + strand at 3366.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 3,364,672 + -1.8 3,364,747 - -0.5 3,365,612 + +0.3 3,365,616 - +0.8 3,365,721 - HP15_3215 0.11 +0.1 3,365,721 - HP15_3215 0.11 +2.9 3,365,811 - HP15_3215 0.19 -0.0 3,365,883 + HP15_3215 0.25 +1.4 3,365,883 + HP15_3215 0.25 +0.5 3,365,891 - HP15_3215 0.25 +2.2 3,365,891 - HP15_3215 0.25 -0.2 3,365,891 - HP15_3215 0.25 +0.3 3,365,891 - HP15_3215 0.25 +0.1 3,365,941 + HP15_3215 0.30 +0.4 3,365,941 + HP15_3215 0.30 -0.2 3,365,949 - HP15_3215 0.30 -0.6 3,365,997 - HP15_3215 0.34 -1.0 3,366,032 + HP15_3215 0.37 -0.1 3,366,032 + HP15_3215 0.37 -0.7 3,366,116 + HP15_3215 0.45 -0.9 3,366,116 + HP15_3215 0.45 -0.0 3,366,124 - HP15_3215 0.45 -0.7 3,366,193 - HP15_3215 0.51 -0.5 3,366,377 - +0.5 3,366,379 - HP15_3215 0.67 -1.7 3,366,415 - HP15_3215 0.70 -0.5 3,366,509 + HP15_3215 0.78 +0.1 3,366,591 + HP15_3215 0.85 -0.7 3,366,632 - HP15_3215 0.89 -0.3 3,366,645 + -0.3 3,366,755 + +0.5 3,366,763 - +0.4 3,366,783 + +1.3 3,366,791 - +1.7 3,366,793 + +1.6 3,366,803 + -0.4 3,366,917 + +0.3 3,366,928 + -0.5 3,366,995 + +1.1
Or see this region's nucleotide sequence