Strain Fitness in Marinobacter adhaerens HP15 around HP15_2783

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2780 and HP15_2781 are separated by 76 nucleotidesHP15_2781 and HP15_2782 are separated by 15 nucleotidesHP15_2782 and HP15_2783 overlap by 4 nucleotidesHP15_2783 and HP15_2784 are separated by 108 nucleotidesHP15_2784 and HP15_2785 are separated by 25 nucleotides HP15_2780: HP15_2780 - monofunctional biosynthetic peptidoglycan transglycosylase, at 2,931,018 to 2,931,710 _2780 HP15_2781: HP15_2781 - hypothetical protein, at 2,931,787 to 2,931,900 _2781 HP15_2782: HP15_2782 - hypothetical protein, at 2,931,916 to 2,932,149 _2782 HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363 _2783 HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215 _2784 HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139 _2785 Position (kb) 2932 2933 2934Strain fitness (log2 ratio) -2 -1 0 1 2at 2931.162 kb on - strand, within HP15_2780at 2931.162 kb on - strand, within HP15_2780at 2931.357 kb on + strand, within HP15_2780at 2931.516 kb on + strand, within HP15_2780at 2931.721 kb on - strandat 2931.785 kb on + strandat 2931.814 kb on - strand, within HP15_2781at 2931.897 kb on + strandat 2931.910 kb on - strandat 2931.910 kb on - strandat 2931.951 kb on + strand, within HP15_2782at 2931.990 kb on - strand, within HP15_2782at 2932.120 kb on - strand, within HP15_2782at 2932.144 kb on - strandat 2932.172 kb on - strandat 2932.174 kb on + strandat 2932.241 kb on - strandat 2932.304 kb on + strand, within HP15_2783at 2932.345 kb on - strand, within HP15_2783at 2932.373 kb on - strand, within HP15_2783at 2932.387 kb on - strand, within HP15_2783at 2932.398 kb on + strandat 2932.409 kb on + strand, within HP15_2783at 2932.417 kb on - strand, within HP15_2783at 2932.437 kb on - strand, within HP15_2783at 2932.499 kb on + strand, within HP15_2783at 2932.577 kb on - strand, within HP15_2783at 2932.841 kb on + strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.969 kb on - strand, within HP15_2783at 2932.984 kb on - strand, within HP15_2783at 2933.042 kb on - strand, within HP15_2783at 2933.065 kb on + strand, within HP15_2783at 2933.068 kb on - strand, within HP15_2783at 2933.068 kb on - strand, within HP15_2783at 2933.105 kb on + strand, within HP15_2783at 2933.108 kb on - strand, within HP15_2783at 2933.210 kb on + strand, within HP15_2783at 2933.213 kb on - strand, within HP15_2783at 2933.221 kb on + strand, within HP15_2783at 2933.229 kb on - strand, within HP15_2783at 2933.229 kb on - strand, within HP15_2783at 2933.249 kb on + strandat 2933.560 kb on + strand, within HP15_2784at 2933.659 kb on - strand, within HP15_2784at 2933.712 kb on + strand, within HP15_2784at 2933.754 kb on + strand, within HP15_2784at 2933.814 kb on + strand, within HP15_2784at 2933.814 kb on + strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.822 kb on - strand, within HP15_2784at 2933.975 kb on + strand, within HP15_2784at 2934.032 kb on - strand, within HP15_2784at 2934.053 kb on + strand, within HP15_2784

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,931,162 - HP15_2780 0.21 +1.9
2,931,162 - HP15_2780 0.21 -0.1
2,931,357 + HP15_2780 0.49 -1.6
2,931,516 + HP15_2780 0.72 +1.4
2,931,721 - -0.0
2,931,785 + +1.6
2,931,814 - HP15_2781 0.24 -0.2
2,931,897 + -0.9
2,931,910 - -1.3
2,931,910 - -0.0
2,931,951 + HP15_2782 0.15 +1.4
2,931,990 - HP15_2782 0.32 -0.4
2,932,120 - HP15_2782 0.87 +0.1
2,932,144 - +0.1
2,932,172 - -0.3
2,932,174 + +1.3
2,932,241 - +0.1
2,932,304 + HP15_2783 0.13 +2.2
2,932,345 - HP15_2783 0.16 +0.3
2,932,373 - HP15_2783 0.19 +1.7
2,932,387 - HP15_2783 0.20 +0.4
2,932,398 + -0.1
2,932,409 + HP15_2783 0.22 +0.4
2,932,417 - HP15_2783 0.22 -1.2
2,932,437 - HP15_2783 0.24 -0.5
2,932,499 + HP15_2783 0.29 +1.1
2,932,577 - HP15_2783 0.35 -1.0
2,932,841 + HP15_2783 0.57 -0.8
2,932,969 - HP15_2783 0.68 -0.5
2,932,969 - HP15_2783 0.68 +1.3
2,932,969 - HP15_2783 0.68 +1.0
2,932,969 - HP15_2783 0.68 -1.0
2,932,969 - HP15_2783 0.68 +1.8
2,932,984 - HP15_2783 0.69 -0.3
2,933,042 - HP15_2783 0.74 -0.5
2,933,065 + HP15_2783 0.75 +0.0
2,933,068 - HP15_2783 0.76 -1.4
2,933,068 - HP15_2783 0.76 +0.1
2,933,105 + HP15_2783 0.79 -0.1
2,933,108 - HP15_2783 0.79 -1.6
2,933,210 + HP15_2783 0.87 +0.2
2,933,213 - HP15_2783 0.88 -1.9
2,933,221 + HP15_2783 0.88 -1.1
2,933,229 - HP15_2783 0.89 +0.1
2,933,229 - HP15_2783 0.89 +1.4
2,933,249 + +0.9
2,933,560 + HP15_2784 0.12 -1.5
2,933,659 - HP15_2784 0.25 -0.2
2,933,712 + HP15_2784 0.32 +1.8
2,933,754 + HP15_2784 0.38 +1.4
2,933,814 + HP15_2784 0.46 +0.4
2,933,814 + HP15_2784 0.46 -1.2
2,933,822 - HP15_2784 0.47 -1.1
2,933,822 - HP15_2784 0.47 +0.4
2,933,822 - HP15_2784 0.47 +0.4
2,933,975 + HP15_2784 0.68 -1.6
2,934,032 - HP15_2784 0.75 +1.1
2,934,053 + HP15_2784 0.78 -0.1

Or see this region's nucleotide sequence