Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2780 and HP15_2781 are separated by 76 nucleotides HP15_2781 and HP15_2782 are separated by 15 nucleotides HP15_2782 and HP15_2783 overlap by 4 nucleotides HP15_2783 and HP15_2784 are separated by 108 nucleotides HP15_2784 and HP15_2785 are separated by 25 nucleotides
HP15_2780: HP15_2780 - monofunctional biosynthetic peptidoglycan transglycosylase, at 2,931,018 to 2,931,710
_2780
HP15_2781: HP15_2781 - hypothetical protein, at 2,931,787 to 2,931,900
_2781
HP15_2782: HP15_2782 - hypothetical protein, at 2,931,916 to 2,932,149
_2782
HP15_2783: HP15_2783 - polyhydroxyalkanoate depolymerase, intracellular, at 2,932,146 to 2,933,363
_2783
HP15_2784: HP15_2784 - 3-ketoacyl-(acyl-carrier-protein) reductase, at 2,933,472 to 2,934,215
_2784
HP15_2785: HP15_2785 - polyhydroxyalkanoic acid synthase, at 2,934,241 to 2,936,139
_2785
Position (kb)
2932
2933
2934 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2931.162 kb on - strand, within HP15_2780 at 2931.162 kb on - strand, within HP15_2780 at 2931.357 kb on + strand, within HP15_2780 at 2931.516 kb on + strand, within HP15_2780 at 2931.721 kb on - strand at 2931.785 kb on + strand at 2931.814 kb on - strand, within HP15_2781 at 2931.897 kb on + strand at 2931.910 kb on - strand at 2931.910 kb on - strand at 2931.951 kb on + strand, within HP15_2782 at 2931.990 kb on - strand, within HP15_2782 at 2932.120 kb on - strand, within HP15_2782 at 2932.144 kb on - strand at 2932.172 kb on - strand at 2932.174 kb on + strand at 2932.241 kb on - strand at 2932.304 kb on + strand, within HP15_2783 at 2932.345 kb on - strand, within HP15_2783 at 2932.373 kb on - strand, within HP15_2783 at 2932.387 kb on - strand, within HP15_2783 at 2932.398 kb on + strand at 2932.409 kb on + strand, within HP15_2783 at 2932.417 kb on - strand, within HP15_2783 at 2932.437 kb on - strand, within HP15_2783 at 2932.499 kb on + strand, within HP15_2783 at 2932.577 kb on - strand, within HP15_2783 at 2932.841 kb on + strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.969 kb on - strand, within HP15_2783 at 2932.984 kb on - strand, within HP15_2783 at 2933.042 kb on - strand, within HP15_2783 at 2933.065 kb on + strand, within HP15_2783 at 2933.068 kb on - strand, within HP15_2783 at 2933.068 kb on - strand, within HP15_2783 at 2933.105 kb on + strand, within HP15_2783 at 2933.108 kb on - strand, within HP15_2783 at 2933.210 kb on + strand, within HP15_2783 at 2933.213 kb on - strand, within HP15_2783 at 2933.221 kb on + strand, within HP15_2783 at 2933.229 kb on - strand, within HP15_2783 at 2933.229 kb on - strand, within HP15_2783 at 2933.249 kb on + strand at 2933.560 kb on + strand, within HP15_2784 at 2933.659 kb on - strand, within HP15_2784 at 2933.712 kb on + strand, within HP15_2784 at 2933.754 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.814 kb on + strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.822 kb on - strand, within HP15_2784 at 2933.975 kb on + strand, within HP15_2784 at 2934.032 kb on - strand, within HP15_2784 at 2934.053 kb on + strand, within HP15_2784
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,931,162 - HP15_2780 0.21 +1.9 2,931,162 - HP15_2780 0.21 -0.1 2,931,357 + HP15_2780 0.49 -1.6 2,931,516 + HP15_2780 0.72 +1.4 2,931,721 - -0.0 2,931,785 + +1.6 2,931,814 - HP15_2781 0.24 -0.2 2,931,897 + -0.9 2,931,910 - -1.3 2,931,910 - -0.0 2,931,951 + HP15_2782 0.15 +1.4 2,931,990 - HP15_2782 0.32 -0.4 2,932,120 - HP15_2782 0.87 +0.1 2,932,144 - +0.1 2,932,172 - -0.3 2,932,174 + +1.3 2,932,241 - +0.1 2,932,304 + HP15_2783 0.13 +2.2 2,932,345 - HP15_2783 0.16 +0.3 2,932,373 - HP15_2783 0.19 +1.7 2,932,387 - HP15_2783 0.20 +0.4 2,932,398 + -0.1 2,932,409 + HP15_2783 0.22 +0.4 2,932,417 - HP15_2783 0.22 -1.2 2,932,437 - HP15_2783 0.24 -0.5 2,932,499 + HP15_2783 0.29 +1.1 2,932,577 - HP15_2783 0.35 -1.0 2,932,841 + HP15_2783 0.57 -0.8 2,932,969 - HP15_2783 0.68 -0.5 2,932,969 - HP15_2783 0.68 +1.3 2,932,969 - HP15_2783 0.68 +1.0 2,932,969 - HP15_2783 0.68 -1.0 2,932,969 - HP15_2783 0.68 +1.8 2,932,984 - HP15_2783 0.69 -0.3 2,933,042 - HP15_2783 0.74 -0.5 2,933,065 + HP15_2783 0.75 +0.0 2,933,068 - HP15_2783 0.76 -1.4 2,933,068 - HP15_2783 0.76 +0.1 2,933,105 + HP15_2783 0.79 -0.1 2,933,108 - HP15_2783 0.79 -1.6 2,933,210 + HP15_2783 0.87 +0.2 2,933,213 - HP15_2783 0.88 -1.9 2,933,221 + HP15_2783 0.88 -1.1 2,933,229 - HP15_2783 0.89 +0.1 2,933,229 - HP15_2783 0.89 +1.4 2,933,249 + +0.9 2,933,560 + HP15_2784 0.12 -1.5 2,933,659 - HP15_2784 0.25 -0.2 2,933,712 + HP15_2784 0.32 +1.8 2,933,754 + HP15_2784 0.38 +1.4 2,933,814 + HP15_2784 0.46 +0.4 2,933,814 + HP15_2784 0.46 -1.2 2,933,822 - HP15_2784 0.47 -1.1 2,933,822 - HP15_2784 0.47 +0.4 2,933,822 - HP15_2784 0.47 +0.4 2,933,975 + HP15_2784 0.68 -1.6 2,934,032 - HP15_2784 0.75 +1.1 2,934,053 + HP15_2784 0.78 -0.1
Or see this region's nucleotide sequence