Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2741 and HP15_2742 are separated by 72 nucleotides HP15_2742 and HP15_2743 are separated by 34 nucleotides HP15_2743 and HP15_2744 are separated by 125 nucleotides
HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359
_2741
HP15_2742: HP15_2742 - protein containing prepilin-type cleavage/methylation, N-terminal domains, at 2,894,432 to 2,894,965
_2742
HP15_2743: HP15_2743 - conserved hypothetical protein, at 2,895,000 to 2,895,413
_2743
HP15_2744: HP15_2744 - NnrU, at 2,895,539 to 2,896,108
_2744
Position (kb)
2894
2895 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2893.436 kb on - strand at 2893.464 kb on + strand at 2893.622 kb on + strand, within HP15_2741 at 2893.622 kb on + strand, within HP15_2741 at 2893.643 kb on - strand, within HP15_2741 at 2893.654 kb on + strand, within HP15_2741 at 2893.662 kb on - strand, within HP15_2741 at 2893.664 kb on - strand, within HP15_2741 at 2893.686 kb on - strand, within HP15_2741 at 2893.729 kb on + strand, within HP15_2741 at 2893.914 kb on + strand, within HP15_2741 at 2894.006 kb on + strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.080 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.164 kb on - strand, within HP15_2741 at 2894.183 kb on + strand, within HP15_2741 at 2894.196 kb on + strand, within HP15_2741 at 2894.273 kb on - strand at 2894.279 kb on + strand at 2894.319 kb on + strand at 2894.341 kb on + strand at 2894.374 kb on + strand at 2894.377 kb on - strand at 2894.428 kb on + strand at 2894.483 kb on - strand at 2894.483 kb on - strand at 2894.483 kb on - strand at 2894.529 kb on + strand, within HP15_2742 at 2894.529 kb on + strand, within HP15_2742 at 2894.529 kb on + strand, within HP15_2742 at 2894.562 kb on - strand, within HP15_2742 at 2894.658 kb on - strand, within HP15_2742 at 2894.661 kb on - strand, within HP15_2742 at 2894.702 kb on - strand, within HP15_2742 at 2895.019 kb on - strand at 2895.116 kb on + strand, within HP15_2743 at 2895.124 kb on - strand, within HP15_2743 at 2895.174 kb on + strand, within HP15_2743 at 2895.258 kb on - strand, within HP15_2743 at 2895.297 kb on - strand, within HP15_2743 at 2895.306 kb on + strand, within HP15_2743 at 2895.306 kb on + strand, within HP15_2743 at 2895.347 kb on + strand, within HP15_2743 at 2895.353 kb on + strand, within HP15_2743 at 2895.355 kb on - strand, within HP15_2743 at 2895.423 kb on + strand at 2895.431 kb on - strand at 2895.509 kb on - strand at 2895.576 kb on - strand at 2895.653 kb on + strand, within HP15_2744 at 2895.660 kb on + strand, within HP15_2744 at 2895.661 kb on - strand, within HP15_2744 at 2895.661 kb on - strand, within HP15_2744 at 2895.689 kb on - strand, within HP15_2744 at 2895.761 kb on + strand, within HP15_2744 at 2895.900 kb on + strand, within HP15_2744 at 2895.922 kb on + strand, within HP15_2744 at 2895.943 kb on + strand, within HP15_2744
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,893,436 - -0.3 2,893,464 + +1.5 2,893,622 + HP15_2741 0.20 -1.0 2,893,622 + HP15_2741 0.20 +1.5 2,893,643 - HP15_2741 0.23 +0.3 2,893,654 + HP15_2741 0.24 +1.8 2,893,662 - HP15_2741 0.25 -0.7 2,893,664 - HP15_2741 0.25 +0.3 2,893,686 - HP15_2741 0.27 -0.1 2,893,729 + HP15_2741 0.32 -1.0 2,893,914 + HP15_2741 0.52 +1.9 2,894,006 + HP15_2741 0.62 -0.6 2,894,080 - HP15_2741 0.70 +0.2 2,894,080 - HP15_2741 0.70 -0.1 2,894,080 - HP15_2741 0.70 +0.0 2,894,164 - HP15_2741 0.79 -0.8 2,894,164 - HP15_2741 0.79 +1.7 2,894,183 + HP15_2741 0.81 -0.1 2,894,196 + HP15_2741 0.82 -0.2 2,894,273 - -0.1 2,894,279 + +3.0 2,894,319 + -0.1 2,894,341 + +1.0 2,894,374 + +0.1 2,894,377 - -1.7 2,894,428 + +1.2 2,894,483 - +0.4 2,894,483 - +0.1 2,894,483 - -0.4 2,894,529 + HP15_2742 0.18 -0.2 2,894,529 + HP15_2742 0.18 -2.2 2,894,529 + HP15_2742 0.18 -0.9 2,894,562 - HP15_2742 0.24 -1.1 2,894,658 - HP15_2742 0.42 +0.2 2,894,661 - HP15_2742 0.43 -1.4 2,894,702 - HP15_2742 0.51 +0.4 2,895,019 - +0.2 2,895,116 + HP15_2743 0.28 -0.3 2,895,124 - HP15_2743 0.30 +0.2 2,895,174 + HP15_2743 0.42 -0.2 2,895,258 - HP15_2743 0.62 +1.3 2,895,297 - HP15_2743 0.72 +0.3 2,895,306 + HP15_2743 0.74 +0.2 2,895,306 + HP15_2743 0.74 -0.0 2,895,347 + HP15_2743 0.84 -0.5 2,895,353 + HP15_2743 0.85 +1.5 2,895,355 - HP15_2743 0.86 +0.3 2,895,423 + -0.5 2,895,431 - -0.0 2,895,509 - +1.5 2,895,576 - -1.6 2,895,653 + HP15_2744 0.20 -0.3 2,895,660 + HP15_2744 0.21 -0.3 2,895,661 - HP15_2744 0.21 -0.8 2,895,661 - HP15_2744 0.21 -0.2 2,895,689 - HP15_2744 0.26 -0.8 2,895,761 + HP15_2744 0.39 +1.9 2,895,900 + HP15_2744 0.63 -0.9 2,895,922 + HP15_2744 0.67 -0.5 2,895,943 + HP15_2744 0.71 -0.2
Or see this region's nucleotide sequence