Strain Fitness in Marinobacter adhaerens HP15 around HP15_2742

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2741 and HP15_2742 are separated by 72 nucleotidesHP15_2742 and HP15_2743 are separated by 34 nucleotidesHP15_2743 and HP15_2744 are separated by 125 nucleotides HP15_2741: HP15_2741 - transcriptional regulator, AraC family protein, at 2,893,433 to 2,894,359 _2741 HP15_2742: HP15_2742 - protein containing prepilin-type cleavage/methylation, N-terminal domains, at 2,894,432 to 2,894,965 _2742 HP15_2743: HP15_2743 - conserved hypothetical protein, at 2,895,000 to 2,895,413 _2743 HP15_2744: HP15_2744 - NnrU, at 2,895,539 to 2,896,108 _2744 Position (kb) 2894 2895Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2893.436 kb on - strandat 2893.464 kb on + strandat 2893.622 kb on + strand, within HP15_2741at 2893.622 kb on + strand, within HP15_2741at 2893.643 kb on - strand, within HP15_2741at 2893.654 kb on + strand, within HP15_2741at 2893.662 kb on - strand, within HP15_2741at 2893.664 kb on - strand, within HP15_2741at 2893.686 kb on - strand, within HP15_2741at 2893.729 kb on + strand, within HP15_2741at 2893.914 kb on + strand, within HP15_2741at 2894.006 kb on + strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.080 kb on - strand, within HP15_2741at 2894.164 kb on - strand, within HP15_2741at 2894.164 kb on - strand, within HP15_2741at 2894.183 kb on + strand, within HP15_2741at 2894.196 kb on + strand, within HP15_2741at 2894.273 kb on - strandat 2894.279 kb on + strandat 2894.319 kb on + strandat 2894.341 kb on + strandat 2894.374 kb on + strandat 2894.377 kb on - strandat 2894.428 kb on + strandat 2894.483 kb on - strandat 2894.483 kb on - strandat 2894.483 kb on - strandat 2894.529 kb on + strand, within HP15_2742at 2894.529 kb on + strand, within HP15_2742at 2894.529 kb on + strand, within HP15_2742at 2894.562 kb on - strand, within HP15_2742at 2894.658 kb on - strand, within HP15_2742at 2894.661 kb on - strand, within HP15_2742at 2894.702 kb on - strand, within HP15_2742at 2895.019 kb on - strandat 2895.116 kb on + strand, within HP15_2743at 2895.124 kb on - strand, within HP15_2743at 2895.174 kb on + strand, within HP15_2743at 2895.258 kb on - strand, within HP15_2743at 2895.297 kb on - strand, within HP15_2743at 2895.306 kb on + strand, within HP15_2743at 2895.306 kb on + strand, within HP15_2743at 2895.347 kb on + strand, within HP15_2743at 2895.353 kb on + strand, within HP15_2743at 2895.355 kb on - strand, within HP15_2743at 2895.423 kb on + strandat 2895.431 kb on - strandat 2895.509 kb on - strandat 2895.576 kb on - strandat 2895.653 kb on + strand, within HP15_2744at 2895.660 kb on + strand, within HP15_2744at 2895.661 kb on - strand, within HP15_2744at 2895.661 kb on - strand, within HP15_2744at 2895.689 kb on - strand, within HP15_2744at 2895.761 kb on + strand, within HP15_2744at 2895.900 kb on + strand, within HP15_2744at 2895.922 kb on + strand, within HP15_2744at 2895.943 kb on + strand, within HP15_2744

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,893,436 - -0.3
2,893,464 + +1.5
2,893,622 + HP15_2741 0.20 -1.0
2,893,622 + HP15_2741 0.20 +1.5
2,893,643 - HP15_2741 0.23 +0.3
2,893,654 + HP15_2741 0.24 +1.8
2,893,662 - HP15_2741 0.25 -0.7
2,893,664 - HP15_2741 0.25 +0.3
2,893,686 - HP15_2741 0.27 -0.1
2,893,729 + HP15_2741 0.32 -1.0
2,893,914 + HP15_2741 0.52 +1.9
2,894,006 + HP15_2741 0.62 -0.6
2,894,080 - HP15_2741 0.70 +0.2
2,894,080 - HP15_2741 0.70 -0.1
2,894,080 - HP15_2741 0.70 +0.0
2,894,164 - HP15_2741 0.79 -0.8
2,894,164 - HP15_2741 0.79 +1.7
2,894,183 + HP15_2741 0.81 -0.1
2,894,196 + HP15_2741 0.82 -0.2
2,894,273 - -0.1
2,894,279 + +3.0
2,894,319 + -0.1
2,894,341 + +1.0
2,894,374 + +0.1
2,894,377 - -1.7
2,894,428 + +1.2
2,894,483 - +0.4
2,894,483 - +0.1
2,894,483 - -0.4
2,894,529 + HP15_2742 0.18 -0.2
2,894,529 + HP15_2742 0.18 -2.2
2,894,529 + HP15_2742 0.18 -0.9
2,894,562 - HP15_2742 0.24 -1.1
2,894,658 - HP15_2742 0.42 +0.2
2,894,661 - HP15_2742 0.43 -1.4
2,894,702 - HP15_2742 0.51 +0.4
2,895,019 - +0.2
2,895,116 + HP15_2743 0.28 -0.3
2,895,124 - HP15_2743 0.30 +0.2
2,895,174 + HP15_2743 0.42 -0.2
2,895,258 - HP15_2743 0.62 +1.3
2,895,297 - HP15_2743 0.72 +0.3
2,895,306 + HP15_2743 0.74 +0.2
2,895,306 + HP15_2743 0.74 -0.0
2,895,347 + HP15_2743 0.84 -0.5
2,895,353 + HP15_2743 0.85 +1.5
2,895,355 - HP15_2743 0.86 +0.3
2,895,423 + -0.5
2,895,431 - -0.0
2,895,509 - +1.5
2,895,576 - -1.6
2,895,653 + HP15_2744 0.20 -0.3
2,895,660 + HP15_2744 0.21 -0.3
2,895,661 - HP15_2744 0.21 -0.8
2,895,661 - HP15_2744 0.21 -0.2
2,895,689 - HP15_2744 0.26 -0.8
2,895,761 + HP15_2744 0.39 +1.9
2,895,900 + HP15_2744 0.63 -0.9
2,895,922 + HP15_2744 0.67 -0.5
2,895,943 + HP15_2744 0.71 -0.2

Or see this region's nucleotide sequence