Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2659 and HP15_2660 overlap by 1 nucleotides HP15_2660 and HP15_2661 overlap by 4 nucleotides HP15_2661 and HP15_2662 are separated by 238 nucleotides
HP15_2659: HP15_2659 - Citrate uptake transporter, large transmembrane component TctA (from data) , at 2,808,744 to 2,810,270
_2659
HP15_2660: HP15_2660 - Citrate uptake transporter, small transmembrane component TctB (from data) , at 2,810,270 to 2,810,716
_2660
HP15_2661: HP15_2661 - Citrate uptake transporter, substrate-binding component TctC (from data) , at 2,810,713 to 2,811,699
_2661
HP15_2662: HP15_2662 - two-component sensor histidine kinase, at 2,811,938 to 2,813,557
_2662
Position (kb)
2810
2811
2812 Strain fitness (log2 ratio)
-1
0
1
2 at 2809.843 kb on - strand, within HP15_2659 at 2809.847 kb on + strand, within HP15_2659 at 2810.390 kb on - strand, within HP15_2660 at 2810.416 kb on + strand, within HP15_2660 at 2810.647 kb on - strand, within HP15_2660 at 2810.852 kb on - strand, within HP15_2661 at 2811.042 kb on + strand, within HP15_2661 at 2811.253 kb on + strand, within HP15_2661 at 2811.431 kb on + strand, within HP15_2661 at 2811.525 kb on + strand, within HP15_2661 at 2811.692 kb on + strand at 2811.898 kb on - strand at 2811.991 kb on - strand at 2812.231 kb on - strand, within HP15_2662 at 2812.294 kb on + strand, within HP15_2662 at 2812.416 kb on + strand, within HP15_2662 at 2812.424 kb on - strand, within HP15_2662 at 2812.430 kb on - strand, within HP15_2662 at 2812.438 kb on + strand, within HP15_2662 at 2812.471 kb on - strand, within HP15_2662 at 2812.476 kb on + strand, within HP15_2662 at 2812.505 kb on - strand, within HP15_2662
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,809,843 - HP15_2659 0.72 +1.1 2,809,847 + HP15_2659 0.72 +1.2 2,810,390 - HP15_2660 0.27 -0.2 2,810,416 + HP15_2660 0.33 -0.4 2,810,647 - HP15_2660 0.84 -0.2 2,810,852 - HP15_2661 0.14 -1.5 2,811,042 + HP15_2661 0.33 -0.3 2,811,253 + HP15_2661 0.55 -0.7 2,811,431 + HP15_2661 0.73 -1.1 2,811,525 + HP15_2661 0.82 -0.5 2,811,692 + -1.2 2,811,898 - -0.4 2,811,991 - +1.1 2,812,231 - HP15_2662 0.18 +1.9 2,812,294 + HP15_2662 0.22 +1.9 2,812,416 + HP15_2662 0.30 -1.1 2,812,424 - HP15_2662 0.30 +1.7 2,812,430 - HP15_2662 0.30 +2.4 2,812,438 + HP15_2662 0.31 +0.7 2,812,471 - HP15_2662 0.33 +0.2 2,812,476 + HP15_2662 0.33 -0.4 2,812,505 - HP15_2662 0.35 -0.1
Or see this region's nucleotide sequence