Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2626 and HP15_2627 are separated by 4 nucleotides HP15_2627 and HP15_2628 are separated by 192 nucleotides HP15_2628 and HP15_2629 are separated by 177 nucleotides HP15_2629 and HP15_2630 are separated by 232 nucleotides
HP15_2626: HP15_2626 - conserved hypothetical protein, at 2,777,613 to 2,778,344
_2626
HP15_2627: HP15_2627 - protein containing DUF1415, at 2,778,349 to 2,778,909
_2627
HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688
_2628
HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150
_2629
HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090
_2630
Position (kb)
2779
2780
2781 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2778.106 kb on + strand, within HP15_2626 at 2778.111 kb on + strand, within HP15_2626 at 2778.165 kb on - strand, within HP15_2626 at 2778.345 kb on - strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.347 kb on + strand at 2778.355 kb on - strand at 2778.355 kb on - strand at 2778.392 kb on - strand at 2778.434 kb on - strand, within HP15_2627 at 2778.634 kb on + strand, within HP15_2627 at 2778.756 kb on - strand, within HP15_2627 at 2778.837 kb on + strand, within HP15_2627 at 2778.911 kb on - strand at 2778.957 kb on + strand at 2778.960 kb on + strand at 2778.970 kb on + strand at 2779.010 kb on - strand at 2779.089 kb on - strand at 2779.184 kb on - strand at 2779.355 kb on + strand, within HP15_2628 at 2779.363 kb on - strand, within HP15_2628 at 2779.426 kb on + strand, within HP15_2628 at 2779.441 kb on - strand, within HP15_2628 at 2779.529 kb on + strand, within HP15_2628 at 2779.547 kb on - strand, within HP15_2628 at 2779.666 kb on - strand, within HP15_2628 at 2779.801 kb on - strand, within HP15_2628 at 2779.803 kb on + strand, within HP15_2628 at 2779.935 kb on + strand, within HP15_2628 at 2779.943 kb on - strand, within HP15_2628 at 2780.019 kb on - strand, within HP15_2628 at 2780.230 kb on + strand, within HP15_2628 at 2780.444 kb on - strand, within HP15_2628 at 2780.472 kb on - strand, within HP15_2628 at 2780.518 kb on - strand, within HP15_2628 at 2780.590 kb on + strand at 2780.754 kb on - strand at 2780.766 kb on + strand at 2780.802 kb on + strand at 2780.812 kb on + strand at 2780.848 kb on - strand at 2780.868 kb on + strand at 2781.013 kb on + strand, within HP15_2629 at 2781.031 kb on - strand, within HP15_2629 at 2781.124 kb on - strand at 2781.276 kb on - strand at 2781.278 kb on + strand at 2781.278 kb on + strand at 2781.298 kb on - strand at 2781.299 kb on + strand at 2781.408 kb on + strand at 2781.502 kb on + strand, within HP15_2630
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,778,106 + HP15_2626 0.67 +1.7 2,778,111 + HP15_2626 0.68 +1.7 2,778,165 - HP15_2626 0.75 +0.2 2,778,345 - +0.2 2,778,347 + +0.9 2,778,347 + +1.9 2,778,347 + -0.1 2,778,355 - +0.3 2,778,355 - -0.5 2,778,392 - -0.9 2,778,434 - HP15_2627 0.15 +0.7 2,778,634 + HP15_2627 0.51 -0.7 2,778,756 - HP15_2627 0.73 +0.7 2,778,837 + HP15_2627 0.87 -0.9 2,778,911 - +0.2 2,778,957 + +1.5 2,778,960 + -0.2 2,778,970 + +1.7 2,779,010 - +0.2 2,779,089 - -0.3 2,779,184 - -0.6 2,779,355 + HP15_2628 0.16 -1.5 2,779,363 - HP15_2628 0.16 -0.3 2,779,426 + HP15_2628 0.20 -0.7 2,779,441 - HP15_2628 0.21 -0.5 2,779,529 + HP15_2628 0.27 -0.6 2,779,547 - HP15_2628 0.28 -0.4 2,779,666 - HP15_2628 0.36 -0.2 2,779,801 - HP15_2628 0.44 +0.0 2,779,803 + HP15_2628 0.44 +0.9 2,779,935 + HP15_2628 0.52 -0.5 2,779,943 - HP15_2628 0.53 +0.5 2,780,019 - HP15_2628 0.58 -0.3 2,780,230 + HP15_2628 0.71 -0.3 2,780,444 - HP15_2628 0.85 +0.4 2,780,472 - HP15_2628 0.86 -2.1 2,780,518 - HP15_2628 0.89 -0.2 2,780,590 + +1.5 2,780,754 - -0.9 2,780,766 + -0.4 2,780,802 + -0.5 2,780,812 + +0.1 2,780,848 - -0.1 2,780,868 + -0.0 2,781,013 + HP15_2629 0.52 -0.2 2,781,031 - HP15_2629 0.58 -0.2 2,781,124 - +0.0 2,781,276 - +0.1 2,781,278 + +1.4 2,781,278 + +1.5 2,781,298 - +2.3 2,781,299 + -0.1 2,781,408 + -0.2 2,781,502 + HP15_2630 0.17 -0.5
Or see this region's nucleotide sequence