Strain Fitness in Marinobacter adhaerens HP15 around HP15_2317

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2315 and HP15_2316 are separated by 36 nucleotidesHP15_2316 and HP15_2317 are separated by 165 nucleotidesHP15_2317 and HP15_2318 overlap by 2 nucleotidesHP15_2318 and HP15_2319 are separated by 23 nucleotidesHP15_2319 and HP15_2320 overlap by 8 nucleotides HP15_2315: HP15_2315 - flagellar motor switch protein FliM-like protein, at 2,435,524 to 2,436,522 _2315 HP15_2316: HP15_2316 - flagellar basal body-associated protein FliL, at 2,436,559 to 2,437,068 _2316 HP15_2317: HP15_2317 - flagellar hook-length control protein, at 2,437,234 to 2,438,424 _2317 HP15_2318: HP15_2318 - hypothetical protein, at 2,438,423 to 2,438,554 _2318 HP15_2319: HP15_2319 - Hpt domain protein, at 2,438,578 to 2,438,925 _2319 HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675 _2320 Position (kb) 2437 2438 2439Strain fitness (log2 ratio) -1 0 1 2 3at 2436.237 kb on + strand, within HP15_2315at 2436.237 kb on + strand, within HP15_2315at 2436.363 kb on + strand, within HP15_2315at 2436.444 kb on + strandat 2436.452 kb on - strandat 2436.478 kb on + strandat 2436.484 kb on - strandat 2436.531 kb on - strandat 2436.544 kb on + strandat 2436.559 kb on + strandat 2436.651 kb on + strand, within HP15_2316at 2436.703 kb on + strand, within HP15_2316at 2436.737 kb on + strand, within HP15_2316at 2436.791 kb on + strand, within HP15_2316at 2436.858 kb on + strand, within HP15_2316at 2436.866 kb on - strand, within HP15_2316at 2436.970 kb on - strand, within HP15_2316at 2437.277 kb on - strandat 2437.277 kb on - strandat 2437.406 kb on - strand, within HP15_2317at 2437.439 kb on + strand, within HP15_2317at 2437.531 kb on + strand, within HP15_2317at 2437.535 kb on - strand, within HP15_2317at 2437.615 kb on - strand, within HP15_2317at 2437.626 kb on + strand, within HP15_2317at 2437.641 kb on + strand, within HP15_2317at 2437.671 kb on + strand, within HP15_2317at 2437.696 kb on + strand, within HP15_2317at 2437.789 kb on - strand, within HP15_2317at 2437.827 kb on + strand, within HP15_2317at 2437.872 kb on - strand, within HP15_2317at 2437.880 kb on + strand, within HP15_2317at 2437.963 kb on + strand, within HP15_2317at 2438.016 kb on + strand, within HP15_2317at 2438.071 kb on + strand, within HP15_2317at 2438.073 kb on - strand, within HP15_2317at 2438.128 kb on + strand, within HP15_2317at 2438.168 kb on + strand, within HP15_2317at 2438.170 kb on + strand, within HP15_2317at 2438.218 kb on + strand, within HP15_2317at 2438.302 kb on + strand, within HP15_2317at 2438.604 kb on - strandat 2438.778 kb on - strand, within HP15_2319at 2438.786 kb on + strand, within HP15_2319at 2438.788 kb on + strand, within HP15_2319at 2438.834 kb on + strand, within HP15_2319at 2438.842 kb on - strand, within HP15_2319at 2438.853 kb on + strand, within HP15_2319at 2438.876 kb on - strand, within HP15_2319at 2439.037 kb on + strandat 2439.136 kb on - strand, within HP15_2320at 2439.206 kb on - strand, within HP15_2320at 2439.393 kb on + strand, within HP15_2320at 2439.393 kb on + strand, within HP15_2320

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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2,436,237 + HP15_2315 0.71 +1.4
2,436,237 + HP15_2315 0.71 +1.5
2,436,363 + HP15_2315 0.84 +1.6
2,436,444 + +1.3
2,436,452 - +1.4
2,436,478 + +1.5
2,436,484 - +0.9
2,436,531 - +0.1
2,436,544 + +1.6
2,436,559 + +1.5
2,436,651 + HP15_2316 0.18 +1.2
2,436,703 + HP15_2316 0.28 +1.1
2,436,737 + HP15_2316 0.35 +2.2
2,436,791 + HP15_2316 0.45 +1.3
2,436,858 + HP15_2316 0.59 +1.6
2,436,866 - HP15_2316 0.60 -0.2
2,436,970 - HP15_2316 0.81 +0.2
2,437,277 - +1.5
2,437,277 - +1.5
2,437,406 - HP15_2317 0.14 +1.2
2,437,439 + HP15_2317 0.17 +1.6
2,437,531 + HP15_2317 0.25 +1.4
2,437,535 - HP15_2317 0.25 +1.5
2,437,615 - HP15_2317 0.32 +3.1
2,437,626 + HP15_2317 0.33 +1.4
2,437,641 + HP15_2317 0.34 +1.2
2,437,671 + HP15_2317 0.37 +1.9
2,437,696 + HP15_2317 0.39 +1.6
2,437,789 - HP15_2317 0.47 +1.4
2,437,827 + HP15_2317 0.50 +0.8
2,437,872 - HP15_2317 0.54 +2.2
2,437,880 + HP15_2317 0.54 +2.1
2,437,963 + HP15_2317 0.61 +1.7
2,438,016 + HP15_2317 0.66 +2.0
2,438,071 + HP15_2317 0.70 +0.6
2,438,073 - HP15_2317 0.70 +1.5
2,438,128 + HP15_2317 0.75 +1.7
2,438,168 + HP15_2317 0.78 +1.5
2,438,170 + HP15_2317 0.79 +2.2
2,438,218 + HP15_2317 0.83 +1.5
2,438,302 + HP15_2317 0.90 +2.1
2,438,604 - +0.8
2,438,778 - HP15_2319 0.57 +1.1
2,438,786 + HP15_2319 0.60 -0.1
2,438,788 + HP15_2319 0.60 +2.1
2,438,834 + HP15_2319 0.74 +0.2
2,438,842 - HP15_2319 0.76 +0.8
2,438,853 + HP15_2319 0.79 -0.5
2,438,876 - HP15_2319 0.86 +3.1
2,439,037 + -1.5
2,439,136 - HP15_2320 0.12 +0.2
2,439,206 - HP15_2320 0.16 +0.7
2,439,393 + HP15_2320 0.27 +0.6
2,439,393 + HP15_2320 0.27 -0.1

Or see this region's nucleotide sequence