Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2315 and HP15_2316 are separated by 36 nucleotides HP15_2316 and HP15_2317 are separated by 165 nucleotides HP15_2317 and HP15_2318 overlap by 2 nucleotides HP15_2318 and HP15_2319 are separated by 23 nucleotides HP15_2319 and HP15_2320 overlap by 8 nucleotides
HP15_2315: HP15_2315 - flagellar motor switch protein FliM-like protein, at 2,435,524 to 2,436,522
_2315
HP15_2316: HP15_2316 - flagellar basal body-associated protein FliL, at 2,436,559 to 2,437,068
_2316
HP15_2317: HP15_2317 - flagellar hook-length control protein, at 2,437,234 to 2,438,424
_2317
HP15_2318: HP15_2318 - hypothetical protein, at 2,438,423 to 2,438,554
_2318
HP15_2319: HP15_2319 - Hpt domain protein, at 2,438,578 to 2,438,925
_2319
HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675
_2320
Position (kb)
2437
2438
2439 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2436.237 kb on + strand, within HP15_2315 at 2436.237 kb on + strand, within HP15_2315 at 2436.363 kb on + strand, within HP15_2315 at 2436.444 kb on + strand at 2436.452 kb on - strand at 2436.478 kb on + strand at 2436.484 kb on - strand at 2436.531 kb on - strand at 2436.544 kb on + strand at 2436.559 kb on + strand at 2436.651 kb on + strand, within HP15_2316 at 2436.703 kb on + strand, within HP15_2316 at 2436.737 kb on + strand, within HP15_2316 at 2436.791 kb on + strand, within HP15_2316 at 2436.858 kb on + strand, within HP15_2316 at 2436.866 kb on - strand, within HP15_2316 at 2436.970 kb on - strand, within HP15_2316 at 2437.277 kb on - strand at 2437.277 kb on - strand at 2437.406 kb on - strand, within HP15_2317 at 2437.439 kb on + strand, within HP15_2317 at 2437.531 kb on + strand, within HP15_2317 at 2437.535 kb on - strand, within HP15_2317 at 2437.615 kb on - strand, within HP15_2317 at 2437.626 kb on + strand, within HP15_2317 at 2437.641 kb on + strand, within HP15_2317 at 2437.671 kb on + strand, within HP15_2317 at 2437.696 kb on + strand, within HP15_2317 at 2437.789 kb on - strand, within HP15_2317 at 2437.827 kb on + strand, within HP15_2317 at 2437.872 kb on - strand, within HP15_2317 at 2437.880 kb on + strand, within HP15_2317 at 2437.963 kb on + strand, within HP15_2317 at 2438.016 kb on + strand, within HP15_2317 at 2438.071 kb on + strand, within HP15_2317 at 2438.073 kb on - strand, within HP15_2317 at 2438.128 kb on + strand, within HP15_2317 at 2438.168 kb on + strand, within HP15_2317 at 2438.170 kb on + strand, within HP15_2317 at 2438.218 kb on + strand, within HP15_2317 at 2438.302 kb on + strand, within HP15_2317 at 2438.604 kb on - strand at 2438.778 kb on - strand, within HP15_2319 at 2438.786 kb on + strand, within HP15_2319 at 2438.788 kb on + strand, within HP15_2319 at 2438.834 kb on + strand, within HP15_2319 at 2438.842 kb on - strand, within HP15_2319 at 2438.853 kb on + strand, within HP15_2319 at 2438.876 kb on - strand, within HP15_2319 at 2439.037 kb on + strand at 2439.136 kb on - strand, within HP15_2320 at 2439.206 kb on - strand, within HP15_2320 at 2439.393 kb on + strand, within HP15_2320 at 2439.393 kb on + strand, within HP15_2320
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,436,237 + HP15_2315 0.71 +1.4 2,436,237 + HP15_2315 0.71 +1.5 2,436,363 + HP15_2315 0.84 +1.6 2,436,444 + +1.3 2,436,452 - +1.4 2,436,478 + +1.5 2,436,484 - +0.9 2,436,531 - +0.1 2,436,544 + +1.6 2,436,559 + +1.5 2,436,651 + HP15_2316 0.18 +1.2 2,436,703 + HP15_2316 0.28 +1.1 2,436,737 + HP15_2316 0.35 +2.2 2,436,791 + HP15_2316 0.45 +1.3 2,436,858 + HP15_2316 0.59 +1.6 2,436,866 - HP15_2316 0.60 -0.2 2,436,970 - HP15_2316 0.81 +0.2 2,437,277 - +1.5 2,437,277 - +1.5 2,437,406 - HP15_2317 0.14 +1.2 2,437,439 + HP15_2317 0.17 +1.6 2,437,531 + HP15_2317 0.25 +1.4 2,437,535 - HP15_2317 0.25 +1.5 2,437,615 - HP15_2317 0.32 +3.1 2,437,626 + HP15_2317 0.33 +1.4 2,437,641 + HP15_2317 0.34 +1.2 2,437,671 + HP15_2317 0.37 +1.9 2,437,696 + HP15_2317 0.39 +1.6 2,437,789 - HP15_2317 0.47 +1.4 2,437,827 + HP15_2317 0.50 +0.8 2,437,872 - HP15_2317 0.54 +2.2 2,437,880 + HP15_2317 0.54 +2.1 2,437,963 + HP15_2317 0.61 +1.7 2,438,016 + HP15_2317 0.66 +2.0 2,438,071 + HP15_2317 0.70 +0.6 2,438,073 - HP15_2317 0.70 +1.5 2,438,128 + HP15_2317 0.75 +1.7 2,438,168 + HP15_2317 0.78 +1.5 2,438,170 + HP15_2317 0.79 +2.2 2,438,218 + HP15_2317 0.83 +1.5 2,438,302 + HP15_2317 0.90 +2.1 2,438,604 - +0.8 2,438,778 - HP15_2319 0.57 +1.1 2,438,786 + HP15_2319 0.60 -0.1 2,438,788 + HP15_2319 0.60 +2.1 2,438,834 + HP15_2319 0.74 +0.2 2,438,842 - HP15_2319 0.76 +0.8 2,438,853 + HP15_2319 0.79 -0.5 2,438,876 - HP15_2319 0.86 +3.1 2,439,037 + -1.5 2,439,136 - HP15_2320 0.12 +0.2 2,439,206 - HP15_2320 0.16 +0.7 2,439,393 + HP15_2320 0.27 +0.6 2,439,393 + HP15_2320 0.27 -0.1
Or see this region's nucleotide sequence