Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1979 and HP15_1980 are separated by 16 nucleotides HP15_1980 and HP15_1981 are separated by 66 nucleotides HP15_1981 and HP15_1982 are separated by 87 nucleotides HP15_1982 and HP15_1983 are separated by 189 nucleotides
HP15_1979: HP15_1979 - conserved hypothetical protein, at 2,093,414 to 2,094,997
_1979
HP15_1980: HP15_1980 - virulence-associated E family protein, at 2,095,014 to 2,095,910
_1980
HP15_1981: HP15_1981 - conserved hypothetical protein, at 2,095,977 to 2,096,213
_1981
HP15_1982: HP15_1982 - hypothetical protein, at 2,096,301 to 2,096,717
_1982
HP15_1983: HP15_1983 - hypothetical protein, at 2,096,907 to 2,097,542
_1983
Position (kb)
2095
2096
2097 Strain fitness (log2 ratio)
-1
0
1
2 at 2094.979 kb on + strand at 2095.016 kb on + strand at 2095.044 kb on + strand at 2095.090 kb on + strand at 2095.158 kb on + strand, within HP15_1980 at 2095.158 kb on + strand, within HP15_1980 at 2095.161 kb on - strand, within HP15_1980 at 2095.166 kb on - strand, within HP15_1980 at 2095.166 kb on - strand, within HP15_1980 at 2095.281 kb on - strand, within HP15_1980 at 2095.351 kb on - strand, within HP15_1980 at 2095.422 kb on - strand, within HP15_1980 at 2095.429 kb on - strand, within HP15_1980 at 2095.468 kb on - strand, within HP15_1980 at 2095.512 kb on - strand, within HP15_1980 at 2095.588 kb on - strand, within HP15_1980 at 2095.617 kb on - strand, within HP15_1980 at 2095.625 kb on + strand, within HP15_1980 at 2095.742 kb on + strand, within HP15_1980 at 2095.825 kb on + strand at 2096.024 kb on + strand, within HP15_1981 at 2096.024 kb on + strand, within HP15_1981 at 2096.092 kb on + strand, within HP15_1981 at 2096.169 kb on + strand, within HP15_1981 at 2096.172 kb on + strand, within HP15_1981 at 2096.771 kb on + strand at 2096.799 kb on - strand at 2096.987 kb on - strand, within HP15_1983 at 2097.050 kb on + strand, within HP15_1983 at 2097.080 kb on + strand, within HP15_1983 at 2097.148 kb on + strand, within HP15_1983 at 2097.174 kb on + strand, within HP15_1983
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 2,094,979 + +0.1 2,095,016 + +0.5 2,095,044 + -0.3 2,095,090 + +0.7 2,095,158 + HP15_1980 0.16 +1.9 2,095,158 + HP15_1980 0.16 +0.0 2,095,161 - HP15_1980 0.16 +1.8 2,095,166 - HP15_1980 0.17 +1.6 2,095,166 - HP15_1980 0.17 -0.5 2,095,281 - HP15_1980 0.30 -0.7 2,095,351 - HP15_1980 0.38 +1.5 2,095,422 - HP15_1980 0.45 +1.5 2,095,429 - HP15_1980 0.46 +1.4 2,095,468 - HP15_1980 0.51 -0.9 2,095,512 - HP15_1980 0.56 -0.1 2,095,588 - HP15_1980 0.64 +0.6 2,095,617 - HP15_1980 0.67 +0.4 2,095,625 + HP15_1980 0.68 +0.3 2,095,742 + HP15_1980 0.81 -0.5 2,095,825 + +1.8 2,096,024 + HP15_1981 0.20 +1.5 2,096,024 + HP15_1981 0.20 +2.1 2,096,092 + HP15_1981 0.49 -0.4 2,096,169 + HP15_1981 0.81 +0.9 2,096,172 + HP15_1981 0.82 +2.1 2,096,771 + +0.7 2,096,799 - -0.2 2,096,987 - HP15_1983 0.13 -0.3 2,097,050 + HP15_1983 0.22 -0.1 2,097,080 + HP15_1983 0.27 -0.3 2,097,148 + HP15_1983 0.38 -0.8 2,097,174 + HP15_1983 0.42 -0.3
Or see this region's nucleotide sequence