Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1685 and HP15_1686 are separated by 122 nucleotides HP15_1686 and HP15_1687 are separated by 123 nucleotides HP15_1687 and HP15_1688 are separated by 99 nucleotides
HP15_1685: HP15_1685 - NAD(P)H dehydrogenase (quinone), at 1,770,797 to 1,771,387
_1685
HP15_1686: HP15_1686 - hypothetical transcriptional regulator, at 1,771,510 to 1,771,869
_1686
HP15_1687: HP15_1687 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,771,993 to 1,773,435
_1687
HP15_1688: HP15_1688 - iron-sulfur cluster-binding protein, at 1,773,535 to 1,774,926
_1688
Position (kb)
1771
1772
1773
1774 Strain fitness (log2 ratio)
-1
0
1
2 at 1771.106 kb on - strand, within HP15_1685 at 1771.118 kb on - strand, within HP15_1685 at 1771.123 kb on - strand, within HP15_1685 at 1771.128 kb on + strand, within HP15_1685 at 1771.128 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.136 kb on - strand, within HP15_1685 at 1771.158 kb on + strand, within HP15_1685 at 1771.166 kb on - strand, within HP15_1685 at 1771.282 kb on + strand, within HP15_1685 at 1771.308 kb on + strand, within HP15_1685 at 1771.529 kb on - strand at 1771.565 kb on + strand, within HP15_1686 at 1771.565 kb on + strand, within HP15_1686 at 1771.573 kb on - strand, within HP15_1686 at 1771.616 kb on + strand, within HP15_1686 at 1771.852 kb on - strand at 1771.852 kb on - strand at 1771.852 kb on - strand at 1771.889 kb on - strand at 1771.891 kb on + strand at 1771.927 kb on + strand at 1771.941 kb on + strand at 1772.045 kb on + strand at 1772.079 kb on - strand at 1772.148 kb on - strand, within HP15_1687 at 1772.191 kb on + strand, within HP15_1687 at 1772.239 kb on - strand, within HP15_1687 at 1772.466 kb on + strand, within HP15_1687 at 1772.547 kb on + strand, within HP15_1687 at 1772.594 kb on - strand, within HP15_1687 at 1772.745 kb on - strand, within HP15_1687 at 1772.883 kb on - strand, within HP15_1687 at 1772.976 kb on + strand, within HP15_1687 at 1773.060 kb on - strand, within HP15_1687 at 1773.071 kb on + strand, within HP15_1687 at 1773.079 kb on - strand, within HP15_1687 at 1773.084 kb on - strand, within HP15_1687 at 1773.214 kb on + strand, within HP15_1687 at 1773.236 kb on + strand, within HP15_1687 at 1773.244 kb on - strand, within HP15_1687 at 1773.284 kb on - strand, within HP15_1687 at 1773.417 kb on - strand at 1773.719 kb on + strand, within HP15_1688 at 1773.791 kb on + strand, within HP15_1688 at 1773.794 kb on - strand, within HP15_1688 at 1773.799 kb on - strand, within HP15_1688 at 1773.860 kb on + strand, within HP15_1688 at 1774.141 kb on + strand, within HP15_1688 at 1774.149 kb on - strand, within HP15_1688 at 1774.156 kb on + strand, within HP15_1688 at 1774.156 kb on + strand, within HP15_1688 at 1774.221 kb on + strand, within HP15_1688 at 1774.221 kb on + strand, within HP15_1688 at 1774.266 kb on + strand, within HP15_1688 at 1774.274 kb on - strand, within HP15_1688 at 1774.281 kb on + strand, within HP15_1688 at 1774.336 kb on - strand, within HP15_1688 at 1774.340 kb on + strand, within HP15_1688
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 1,771,106 - HP15_1685 0.52 +0.2 1,771,118 - HP15_1685 0.54 -0.5 1,771,123 - HP15_1685 0.55 +1.3 1,771,128 + HP15_1685 0.56 -0.1 1,771,128 - HP15_1685 0.56 -0.5 1,771,136 - HP15_1685 0.57 -0.3 1,771,136 - HP15_1685 0.57 +1.8 1,771,158 + HP15_1685 0.61 -1.6 1,771,166 - HP15_1685 0.62 +1.7 1,771,282 + HP15_1685 0.82 +2.7 1,771,308 + HP15_1685 0.86 +0.7 1,771,529 - -1.0 1,771,565 + HP15_1686 0.15 -0.9 1,771,565 + HP15_1686 0.15 -0.2 1,771,573 - HP15_1686 0.17 -0.7 1,771,616 + HP15_1686 0.29 -0.7 1,771,852 - +1.6 1,771,852 - -1.1 1,771,852 - +0.4 1,771,889 - +2.1 1,771,891 + -0.1 1,771,927 + -0.1 1,771,941 + +0.2 1,772,045 + -0.6 1,772,079 - -0.2 1,772,148 - HP15_1687 0.11 -0.5 1,772,191 + HP15_1687 0.14 +0.3 1,772,239 - HP15_1687 0.17 +0.2 1,772,466 + HP15_1687 0.33 -0.9 1,772,547 + HP15_1687 0.38 -0.8 1,772,594 - HP15_1687 0.42 +1.2 1,772,745 - HP15_1687 0.52 +1.1 1,772,883 - HP15_1687 0.62 -1.1 1,772,976 + HP15_1687 0.68 +0.1 1,773,060 - HP15_1687 0.74 -0.4 1,773,071 + HP15_1687 0.75 -0.4 1,773,079 - HP15_1687 0.75 +1.5 1,773,084 - HP15_1687 0.76 -0.2 1,773,214 + HP15_1687 0.85 +1.0 1,773,236 + HP15_1687 0.86 +0.4 1,773,244 - HP15_1687 0.87 -0.4 1,773,284 - HP15_1687 0.89 -0.6 1,773,417 - -0.7 1,773,719 + HP15_1688 0.13 +1.5 1,773,791 + HP15_1688 0.18 -0.8 1,773,794 - HP15_1688 0.19 +0.6 1,773,799 - HP15_1688 0.19 -0.3 1,773,860 + HP15_1688 0.23 -0.7 1,774,141 + HP15_1688 0.44 -1.1 1,774,149 - HP15_1688 0.44 +1.4 1,774,156 + HP15_1688 0.45 +0.1 1,774,156 + HP15_1688 0.45 +0.3 1,774,221 + HP15_1688 0.49 +1.5 1,774,221 + HP15_1688 0.49 +0.1 1,774,266 + HP15_1688 0.53 +0.4 1,774,274 - HP15_1688 0.53 +2.0 1,774,281 + HP15_1688 0.54 +1.7 1,774,336 - HP15_1688 0.58 -0.5 1,774,340 + HP15_1688 0.58 -0.3
Or see this region's nucleotide sequence