Strain Fitness in Marinobacter adhaerens HP15 around HP15_1687

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1685 and HP15_1686 are separated by 122 nucleotidesHP15_1686 and HP15_1687 are separated by 123 nucleotidesHP15_1687 and HP15_1688 are separated by 99 nucleotides HP15_1685: HP15_1685 - NAD(P)H dehydrogenase (quinone), at 1,770,797 to 1,771,387 _1685 HP15_1686: HP15_1686 - hypothetical transcriptional regulator, at 1,771,510 to 1,771,869 _1686 HP15_1687: HP15_1687 - transcriptional regulator, GntR family with aminotransferase domain protein, at 1,771,993 to 1,773,435 _1687 HP15_1688: HP15_1688 - iron-sulfur cluster-binding protein, at 1,773,535 to 1,774,926 _1688 Position (kb) 1771 1772 1773 1774Strain fitness (log2 ratio) -1 0 1 2at 1771.106 kb on - strand, within HP15_1685at 1771.118 kb on - strand, within HP15_1685at 1771.123 kb on - strand, within HP15_1685at 1771.128 kb on + strand, within HP15_1685at 1771.128 kb on - strand, within HP15_1685at 1771.136 kb on - strand, within HP15_1685at 1771.136 kb on - strand, within HP15_1685at 1771.158 kb on + strand, within HP15_1685at 1771.166 kb on - strand, within HP15_1685at 1771.282 kb on + strand, within HP15_1685at 1771.308 kb on + strand, within HP15_1685at 1771.529 kb on - strandat 1771.565 kb on + strand, within HP15_1686at 1771.565 kb on + strand, within HP15_1686at 1771.573 kb on - strand, within HP15_1686at 1771.616 kb on + strand, within HP15_1686at 1771.852 kb on - strandat 1771.852 kb on - strandat 1771.852 kb on - strandat 1771.889 kb on - strandat 1771.891 kb on + strandat 1771.927 kb on + strandat 1771.941 kb on + strandat 1772.045 kb on + strandat 1772.079 kb on - strandat 1772.148 kb on - strand, within HP15_1687at 1772.191 kb on + strand, within HP15_1687at 1772.239 kb on - strand, within HP15_1687at 1772.466 kb on + strand, within HP15_1687at 1772.547 kb on + strand, within HP15_1687at 1772.594 kb on - strand, within HP15_1687at 1772.745 kb on - strand, within HP15_1687at 1772.883 kb on - strand, within HP15_1687at 1772.976 kb on + strand, within HP15_1687at 1773.060 kb on - strand, within HP15_1687at 1773.071 kb on + strand, within HP15_1687at 1773.079 kb on - strand, within HP15_1687at 1773.084 kb on - strand, within HP15_1687at 1773.214 kb on + strand, within HP15_1687at 1773.236 kb on + strand, within HP15_1687at 1773.244 kb on - strand, within HP15_1687at 1773.284 kb on - strand, within HP15_1687at 1773.417 kb on - strandat 1773.719 kb on + strand, within HP15_1688at 1773.791 kb on + strand, within HP15_1688at 1773.794 kb on - strand, within HP15_1688at 1773.799 kb on - strand, within HP15_1688at 1773.860 kb on + strand, within HP15_1688at 1774.141 kb on + strand, within HP15_1688at 1774.149 kb on - strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.156 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.221 kb on + strand, within HP15_1688at 1774.266 kb on + strand, within HP15_1688at 1774.274 kb on - strand, within HP15_1688at 1774.281 kb on + strand, within HP15_1688at 1774.336 kb on - strand, within HP15_1688at 1774.340 kb on + strand, within HP15_1688

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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1,771,106 - HP15_1685 0.52 +0.2
1,771,118 - HP15_1685 0.54 -0.5
1,771,123 - HP15_1685 0.55 +1.3
1,771,128 + HP15_1685 0.56 -0.1
1,771,128 - HP15_1685 0.56 -0.5
1,771,136 - HP15_1685 0.57 -0.3
1,771,136 - HP15_1685 0.57 +1.8
1,771,158 + HP15_1685 0.61 -1.6
1,771,166 - HP15_1685 0.62 +1.7
1,771,282 + HP15_1685 0.82 +2.7
1,771,308 + HP15_1685 0.86 +0.7
1,771,529 - -1.0
1,771,565 + HP15_1686 0.15 -0.9
1,771,565 + HP15_1686 0.15 -0.2
1,771,573 - HP15_1686 0.17 -0.7
1,771,616 + HP15_1686 0.29 -0.7
1,771,852 - +1.6
1,771,852 - -1.1
1,771,852 - +0.4
1,771,889 - +2.1
1,771,891 + -0.1
1,771,927 + -0.1
1,771,941 + +0.2
1,772,045 + -0.6
1,772,079 - -0.2
1,772,148 - HP15_1687 0.11 -0.5
1,772,191 + HP15_1687 0.14 +0.3
1,772,239 - HP15_1687 0.17 +0.2
1,772,466 + HP15_1687 0.33 -0.9
1,772,547 + HP15_1687 0.38 -0.8
1,772,594 - HP15_1687 0.42 +1.2
1,772,745 - HP15_1687 0.52 +1.1
1,772,883 - HP15_1687 0.62 -1.1
1,772,976 + HP15_1687 0.68 +0.1
1,773,060 - HP15_1687 0.74 -0.4
1,773,071 + HP15_1687 0.75 -0.4
1,773,079 - HP15_1687 0.75 +1.5
1,773,084 - HP15_1687 0.76 -0.2
1,773,214 + HP15_1687 0.85 +1.0
1,773,236 + HP15_1687 0.86 +0.4
1,773,244 - HP15_1687 0.87 -0.4
1,773,284 - HP15_1687 0.89 -0.6
1,773,417 - -0.7
1,773,719 + HP15_1688 0.13 +1.5
1,773,791 + HP15_1688 0.18 -0.8
1,773,794 - HP15_1688 0.19 +0.6
1,773,799 - HP15_1688 0.19 -0.3
1,773,860 + HP15_1688 0.23 -0.7
1,774,141 + HP15_1688 0.44 -1.1
1,774,149 - HP15_1688 0.44 +1.4
1,774,156 + HP15_1688 0.45 +0.1
1,774,156 + HP15_1688 0.45 +0.3
1,774,221 + HP15_1688 0.49 +1.5
1,774,221 + HP15_1688 0.49 +0.1
1,774,266 + HP15_1688 0.53 +0.4
1,774,274 - HP15_1688 0.53 +2.0
1,774,281 + HP15_1688 0.54 +1.7
1,774,336 - HP15_1688 0.58 -0.5
1,774,340 + HP15_1688 0.58 -0.3

Or see this region's nucleotide sequence