Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_rRNA8 and HP15_rRNA9 are separated by 101 nucleotides HP15_rRNA9 and HP15_1247 are separated by 66 nucleotides HP15_1247 and HP15_1248 overlap by 4 nucleotides HP15_1248 and HP15_1249 overlap by 4 nucleotides
HP15_rRNA8: HP15_rRNA8 - 23S ribosomal RNA, at 1,301,060 to 1,303,951
_rRNA8
HP15_rRNA9: HP15_rRNA9 - 5S ribosomal RNA, at 1,304,053 to 1,304,166
_rRNA9
HP15_1247: HP15_1247 - signal transduction histidine kinase, at 1,304,233 to 1,304,913
_1247
HP15_1248: HP15_1248 - response regulator/TPR domain protein, at 1,304,910 to 1,306,547
_1248
HP15_1249: HP15_1249 - two-component system sensor protein, at 1,306,544 to 1,310,062
_1249
Position (kb)
1304
1305
1306
1307 Strain fitness (log2 ratio)
-1
0
1
2 at 1304.231 kb on + strand at 1304.442 kb on + strand, within HP15_1247 at 1304.519 kb on - strand, within HP15_1247 at 1304.528 kb on + strand, within HP15_1247 at 1304.627 kb on - strand, within HP15_1247 at 1304.661 kb on + strand, within HP15_1247 at 1304.828 kb on + strand, within HP15_1247 at 1305.037 kb on + strand at 1305.065 kb on - strand at 1305.172 kb on - strand, within HP15_1248 at 1305.283 kb on - strand, within HP15_1248 at 1305.317 kb on - strand, within HP15_1248 at 1305.340 kb on - strand, within HP15_1248 at 1305.404 kb on - strand, within HP15_1248 at 1305.435 kb on - strand, within HP15_1248 at 1305.476 kb on + strand, within HP15_1248 at 1305.596 kb on + strand, within HP15_1248 at 1305.599 kb on - strand, within HP15_1248 at 1305.692 kb on + strand, within HP15_1248 at 1305.821 kb on + strand, within HP15_1248 at 1305.871 kb on - strand, within HP15_1248 at 1306.062 kb on + strand, within HP15_1248 at 1306.185 kb on - strand, within HP15_1248 at 1306.394 kb on + strand at 1306.531 kb on + strand at 1306.768 kb on + strand at 1306.922 kb on + strand, within HP15_1249 at 1306.965 kb on + strand, within HP15_1249
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 1,304,231 + +0.3 1,304,442 + HP15_1247 0.31 -0.6 1,304,519 - HP15_1247 0.42 -0.5 1,304,528 + HP15_1247 0.43 +2.1 1,304,627 - HP15_1247 0.58 -0.4 1,304,661 + HP15_1247 0.63 +0.1 1,304,828 + HP15_1247 0.87 +1.4 1,305,037 + -0.6 1,305,065 - +1.4 1,305,172 - HP15_1248 0.16 +1.7 1,305,283 - HP15_1248 0.23 -0.7 1,305,317 - HP15_1248 0.25 +2.1 1,305,340 - HP15_1248 0.26 +1.7 1,305,404 - HP15_1248 0.30 +1.9 1,305,435 - HP15_1248 0.32 -0.9 1,305,476 + HP15_1248 0.35 +1.6 1,305,596 + HP15_1248 0.42 +1.8 1,305,599 - HP15_1248 0.42 -0.8 1,305,692 + HP15_1248 0.48 -0.2 1,305,821 + HP15_1248 0.56 +0.4 1,305,871 - HP15_1248 0.59 +1.6 1,306,062 + HP15_1248 0.70 +0.2 1,306,185 - HP15_1248 0.78 -0.8 1,306,394 + -0.2 1,306,531 + -0.4 1,306,768 + -0.9 1,306,922 + HP15_1249 0.11 +1.2 1,306,965 + HP15_1249 0.12 +0.2
Or see this region's nucleotide sequence