Strain Fitness in Marinobacter adhaerens HP15 around HP15_1070

Experiment: L-Glutamic as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1069 and HP15_1070 are separated by 81 nucleotidesHP15_1070 and HP15_1071 are separated by 154 nucleotides HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839 _1069 HP15_1070: HP15_1070 - TRAP-type uncharacterized transport system, fused permease component, at 1,097,921 to 1,100,524 _1070 HP15_1071: HP15_1071 - threonyl-tRNA synthetase, at 1,100,679 to 1,102,604 _1071 Position (kb) 1097 1098 1099 1100 1101Strain fitness (log2 ratio) -2 -1 0 1at 1096.935 kb on + strandat 1097.170 kb on + strand, within HP15_1069at 1097.170 kb on + strand, within HP15_1069at 1097.170 kb on + strand, within HP15_1069at 1097.178 kb on - strand, within HP15_1069at 1097.205 kb on - strand, within HP15_1069at 1097.228 kb on - strand, within HP15_1069at 1097.243 kb on - strand, within HP15_1069at 1097.371 kb on - strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.410 kb on + strand, within HP15_1069at 1097.418 kb on - strand, within HP15_1069at 1097.434 kb on + strand, within HP15_1069at 1097.442 kb on - strand, within HP15_1069at 1097.502 kb on + strandat 1097.543 kb on - strand, within HP15_1069at 1097.660 kb on - strand, within HP15_1069at 1097.787 kb on - strandat 1097.794 kb on - strandat 1097.865 kb on + strandat 1097.946 kb on - strandat 1098.258 kb on + strand, within HP15_1070at 1098.937 kb on + strand, within HP15_1070at 1098.937 kb on + strand, within HP15_1070at 1099.005 kb on + strand, within HP15_1070at 1099.013 kb on - strand, within HP15_1070at 1099.013 kb on - strand, within HP15_1070at 1099.047 kb on + strand, within HP15_1070at 1099.055 kb on + strand, within HP15_1070at 1099.055 kb on + strand, within HP15_1070at 1099.063 kb on - strand, within HP15_1070at 1099.063 kb on - strand, within HP15_1070at 1099.063 kb on - strand, within HP15_1070at 1099.155 kb on - strand, within HP15_1070at 1099.256 kb on + strand, within HP15_1070at 1099.264 kb on - strand, within HP15_1070at 1099.264 kb on - strand, within HP15_1070at 1099.312 kb on - strand, within HP15_1070at 1099.483 kb on + strand, within HP15_1070at 1099.535 kb on - strand, within HP15_1070at 1099.592 kb on - strand, within HP15_1070at 1099.765 kb on - strand, within HP15_1070at 1099.934 kb on + strand, within HP15_1070at 1100.194 kb on - strand, within HP15_1070at 1100.204 kb on - strand, within HP15_1070at 1100.399 kb on - strandat 1100.404 kb on - strandat 1100.468 kb on - strandat 1100.493 kb on + strandat 1100.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic as (N)
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1,096,935 + -1.8
1,097,170 + HP15_1069 0.32 -0.3
1,097,170 + HP15_1069 0.32 -1.2
1,097,170 + HP15_1069 0.32 -0.3
1,097,178 - HP15_1069 0.33 +1.1
1,097,205 - HP15_1069 0.35 -0.7
1,097,228 - HP15_1069 0.38 -1.4
1,097,243 - HP15_1069 0.39 -1.1
1,097,371 - HP15_1069 0.52 -1.4
1,097,410 + HP15_1069 0.56 -0.1
1,097,410 + HP15_1069 0.56 -2.5
1,097,410 + HP15_1069 0.56 +0.5
1,097,418 - HP15_1069 0.57 -0.5
1,097,434 + HP15_1069 0.59 -2.2
1,097,442 - HP15_1069 0.60 -2.4
1,097,502 + -0.1
1,097,543 - HP15_1069 0.70 -0.3
1,097,660 - HP15_1069 0.82 -0.1
1,097,787 - -2.0
1,097,794 - -1.1
1,097,865 + -0.3
1,097,946 - -0.7
1,098,258 + HP15_1070 0.13 -0.0
1,098,937 + HP15_1070 0.39 -1.3
1,098,937 + HP15_1070 0.39 +0.2
1,099,005 + HP15_1070 0.42 -1.1
1,099,013 - HP15_1070 0.42 -1.9
1,099,013 - HP15_1070 0.42 -0.6
1,099,047 + HP15_1070 0.43 -1.3
1,099,055 + HP15_1070 0.44 +0.3
1,099,055 + HP15_1070 0.44 -2.0
1,099,063 - HP15_1070 0.44 +0.2
1,099,063 - HP15_1070 0.44 -1.3
1,099,063 - HP15_1070 0.44 +1.2
1,099,155 - HP15_1070 0.47 -1.9
1,099,256 + HP15_1070 0.51 -0.5
1,099,264 - HP15_1070 0.52 -0.4
1,099,264 - HP15_1070 0.52 -1.5
1,099,312 - HP15_1070 0.53 +0.0
1,099,483 + HP15_1070 0.60 -1.3
1,099,535 - HP15_1070 0.62 -1.3
1,099,592 - HP15_1070 0.64 -1.9
1,099,765 - HP15_1070 0.71 -0.9
1,099,934 + HP15_1070 0.77 -1.1
1,100,194 - HP15_1070 0.87 -2.4
1,100,204 - HP15_1070 0.88 -1.5
1,100,399 - -1.7
1,100,404 - -0.9
1,100,468 - -1.6
1,100,493 + +0.3
1,100,560 - -0.7

Or see this region's nucleotide sequence