Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1069 and HP15_1070 are separated by 81 nucleotides HP15_1070 and HP15_1071 are separated by 154 nucleotides
HP15_1069: HP15_1069 - TRAP transporter solute receptor, TAXI family protein, at 1,096,856 to 1,097,839
_1069
HP15_1070: HP15_1070 - TRAP-type uncharacterized transport system, fused permease component, at 1,097,921 to 1,100,524
_1070
HP15_1071: HP15_1071 - threonyl-tRNA synthetase, at 1,100,679 to 1,102,604
_1071
Position (kb)
1097
1098
1099
1100
1101 Strain fitness (log2 ratio)
-2
-1
0
1 at 1096.935 kb on + strand at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.170 kb on + strand, within HP15_1069 at 1097.178 kb on - strand, within HP15_1069 at 1097.205 kb on - strand, within HP15_1069 at 1097.228 kb on - strand, within HP15_1069 at 1097.243 kb on - strand, within HP15_1069 at 1097.371 kb on - strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.410 kb on + strand, within HP15_1069 at 1097.418 kb on - strand, within HP15_1069 at 1097.434 kb on + strand, within HP15_1069 at 1097.442 kb on - strand, within HP15_1069 at 1097.502 kb on + strand at 1097.543 kb on - strand, within HP15_1069 at 1097.660 kb on - strand, within HP15_1069 at 1097.787 kb on - strand at 1097.794 kb on - strand at 1097.865 kb on + strand at 1097.946 kb on - strand at 1098.258 kb on + strand, within HP15_1070 at 1098.937 kb on + strand, within HP15_1070 at 1098.937 kb on + strand, within HP15_1070 at 1099.005 kb on + strand, within HP15_1070 at 1099.013 kb on - strand, within HP15_1070 at 1099.013 kb on - strand, within HP15_1070 at 1099.047 kb on + strand, within HP15_1070 at 1099.055 kb on + strand, within HP15_1070 at 1099.055 kb on + strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.063 kb on - strand, within HP15_1070 at 1099.155 kb on - strand, within HP15_1070 at 1099.256 kb on + strand, within HP15_1070 at 1099.264 kb on - strand, within HP15_1070 at 1099.264 kb on - strand, within HP15_1070 at 1099.312 kb on - strand, within HP15_1070 at 1099.483 kb on + strand, within HP15_1070 at 1099.535 kb on - strand, within HP15_1070 at 1099.592 kb on - strand, within HP15_1070 at 1099.765 kb on - strand, within HP15_1070 at 1099.934 kb on + strand, within HP15_1070 at 1100.194 kb on - strand, within HP15_1070 at 1100.204 kb on - strand, within HP15_1070 at 1100.399 kb on - strand at 1100.404 kb on - strand at 1100.468 kb on - strand at 1100.493 kb on + strand at 1100.560 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 1,096,935 + -1.8 1,097,170 + HP15_1069 0.32 -0.3 1,097,170 + HP15_1069 0.32 -1.2 1,097,170 + HP15_1069 0.32 -0.3 1,097,178 - HP15_1069 0.33 +1.1 1,097,205 - HP15_1069 0.35 -0.7 1,097,228 - HP15_1069 0.38 -1.4 1,097,243 - HP15_1069 0.39 -1.1 1,097,371 - HP15_1069 0.52 -1.4 1,097,410 + HP15_1069 0.56 -0.1 1,097,410 + HP15_1069 0.56 -2.5 1,097,410 + HP15_1069 0.56 +0.5 1,097,418 - HP15_1069 0.57 -0.5 1,097,434 + HP15_1069 0.59 -2.2 1,097,442 - HP15_1069 0.60 -2.4 1,097,502 + -0.1 1,097,543 - HP15_1069 0.70 -0.3 1,097,660 - HP15_1069 0.82 -0.1 1,097,787 - -2.0 1,097,794 - -1.1 1,097,865 + -0.3 1,097,946 - -0.7 1,098,258 + HP15_1070 0.13 -0.0 1,098,937 + HP15_1070 0.39 -1.3 1,098,937 + HP15_1070 0.39 +0.2 1,099,005 + HP15_1070 0.42 -1.1 1,099,013 - HP15_1070 0.42 -1.9 1,099,013 - HP15_1070 0.42 -0.6 1,099,047 + HP15_1070 0.43 -1.3 1,099,055 + HP15_1070 0.44 +0.3 1,099,055 + HP15_1070 0.44 -2.0 1,099,063 - HP15_1070 0.44 +0.2 1,099,063 - HP15_1070 0.44 -1.3 1,099,063 - HP15_1070 0.44 +1.2 1,099,155 - HP15_1070 0.47 -1.9 1,099,256 + HP15_1070 0.51 -0.5 1,099,264 - HP15_1070 0.52 -0.4 1,099,264 - HP15_1070 0.52 -1.5 1,099,312 - HP15_1070 0.53 +0.0 1,099,483 + HP15_1070 0.60 -1.3 1,099,535 - HP15_1070 0.62 -1.3 1,099,592 - HP15_1070 0.64 -1.9 1,099,765 - HP15_1070 0.71 -0.9 1,099,934 + HP15_1070 0.77 -1.1 1,100,194 - HP15_1070 0.87 -2.4 1,100,204 - HP15_1070 0.88 -1.5 1,100,399 - -1.7 1,100,404 - -0.9 1,100,468 - -1.6 1,100,493 + +0.3 1,100,560 - -0.7
Or see this region's nucleotide sequence