Experiment: L-Glutamic as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1011 and HP15_1012 are separated by 312 nucleotides HP15_1012 and HP15_1013 are separated by 2 nucleotides HP15_1013 and HP15_1014 are separated by 55 nucleotides
HP15_1011: HP15_1011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,022,681 to 1,024,597
_1011
HP15_1012: HP15_1012 - nitrate transporter component, NrtA, at 1,024,910 to 1,026,331
_1012
HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161
_1013
HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125
_1014
Position (kb)
1024
1025
1026
1027 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1023.947 kb on + strand, within HP15_1011 at 1023.947 kb on + strand, within HP15_1011 at 1023.958 kb on + strand, within HP15_1011 at 1023.958 kb on + strand, within HP15_1011 at 1024.139 kb on + strand, within HP15_1011 at 1024.146 kb on + strand, within HP15_1011 at 1024.167 kb on - strand, within HP15_1011 at 1024.203 kb on - strand, within HP15_1011 at 1024.235 kb on - strand, within HP15_1011 at 1024.360 kb on - strand, within HP15_1011 at 1024.369 kb on + strand, within HP15_1011 at 1024.411 kb on + strand at 1024.469 kb on + strand at 1024.502 kb on - strand at 1024.811 kb on - strand at 1024.830 kb on + strand at 1024.969 kb on + strand at 1025.037 kb on + strand at 1025.200 kb on - strand, within HP15_1012 at 1025.222 kb on + strand, within HP15_1012 at 1025.232 kb on + strand, within HP15_1012 at 1025.232 kb on + strand, within HP15_1012 at 1025.248 kb on + strand, within HP15_1012 at 1025.349 kb on + strand, within HP15_1012 at 1025.357 kb on - strand, within HP15_1012 at 1025.357 kb on - strand, within HP15_1012 at 1025.460 kb on - strand, within HP15_1012 at 1025.559 kb on - strand, within HP15_1012 at 1025.570 kb on - strand, within HP15_1012 at 1025.570 kb on - strand, within HP15_1012 at 1025.670 kb on - strand, within HP15_1012 at 1025.677 kb on + strand, within HP15_1012 at 1025.696 kb on + strand, within HP15_1012 at 1025.721 kb on + strand, within HP15_1012 at 1025.845 kb on - strand, within HP15_1012 at 1025.888 kb on + strand, within HP15_1012 at 1025.915 kb on + strand, within HP15_1012 at 1025.979 kb on + strand, within HP15_1012 at 1025.987 kb on - strand, within HP15_1012 at 1025.987 kb on - strand, within HP15_1012 at 1026.065 kb on + strand, within HP15_1012 at 1026.072 kb on + strand, within HP15_1012 at 1026.111 kb on + strand, within HP15_1012 at 1026.178 kb on + strand, within HP15_1012 at 1026.186 kb on - strand, within HP15_1012 at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.228 kb on - strand at 1026.230 kb on + strand at 1026.230 kb on + strand at 1026.251 kb on + strand at 1026.278 kb on + strand at 1026.348 kb on + strand at 1026.358 kb on + strand at 1026.436 kb on + strand, within HP15_1013 at 1026.439 kb on - strand, within HP15_1013 at 1026.538 kb on - strand, within HP15_1013 at 1026.575 kb on + strand, within HP15_1013 at 1026.593 kb on - strand, within HP15_1013 at 1026.607 kb on - strand, within HP15_1013 at 1026.612 kb on - strand, within HP15_1013 at 1026.729 kb on + strand, within HP15_1013 at 1026.738 kb on + strand, within HP15_1013 at 1026.740 kb on + strand, within HP15_1013 at 1026.747 kb on - strand, within HP15_1013 at 1026.748 kb on - strand, within HP15_1013 at 1026.855 kb on + strand, within HP15_1013 at 1026.888 kb on - strand, within HP15_1013 at 1026.915 kb on + strand, within HP15_1013 at 1026.940 kb on + strand, within HP15_1013 at 1027.057 kb on + strand, within HP15_1013 at 1027.060 kb on - strand, within HP15_1013 at 1027.062 kb on + strand, within HP15_1013 at 1027.065 kb on - strand, within HP15_1013 at 1027.115 kb on + strand at 1027.156 kb on + strand at 1027.190 kb on + strand at 1027.199 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic as (N) remove 1,023,947 + HP15_1011 0.66 -1.3 1,023,947 + HP15_1011 0.66 -0.2 1,023,958 + HP15_1011 0.67 +1.0 1,023,958 + HP15_1011 0.67 -0.3 1,024,139 + HP15_1011 0.76 -0.3 1,024,146 + HP15_1011 0.76 -0.7 1,024,167 - HP15_1011 0.78 -0.2 1,024,203 - HP15_1011 0.79 +0.1 1,024,235 - HP15_1011 0.81 -0.0 1,024,360 - HP15_1011 0.88 +0.4 1,024,369 + HP15_1011 0.88 -0.7 1,024,411 + +0.0 1,024,469 + +1.8 1,024,502 - -0.5 1,024,811 - +0.0 1,024,830 + -1.2 1,024,969 + +0.2 1,025,037 + +0.2 1,025,200 - HP15_1012 0.20 +1.7 1,025,222 + HP15_1012 0.22 -0.1 1,025,232 + HP15_1012 0.23 +1.8 1,025,232 + HP15_1012 0.23 -0.2 1,025,248 + HP15_1012 0.24 +0.2 1,025,349 + HP15_1012 0.31 -1.0 1,025,357 - HP15_1012 0.31 -0.7 1,025,357 - HP15_1012 0.31 -0.4 1,025,460 - HP15_1012 0.39 +1.7 1,025,559 - HP15_1012 0.46 +1.6 1,025,570 - HP15_1012 0.46 -0.9 1,025,570 - HP15_1012 0.46 +2.3 1,025,670 - HP15_1012 0.53 +1.5 1,025,677 + HP15_1012 0.54 +2.0 1,025,696 + HP15_1012 0.55 +1.3 1,025,721 + HP15_1012 0.57 +1.5 1,025,845 - HP15_1012 0.66 -0.1 1,025,888 + HP15_1012 0.69 +1.7 1,025,915 + HP15_1012 0.71 +2.0 1,025,979 + HP15_1012 0.75 +1.3 1,025,987 - HP15_1012 0.76 -0.1 1,025,987 - HP15_1012 0.76 +0.4 1,026,065 + HP15_1012 0.81 +1.5 1,026,072 + HP15_1012 0.82 +0.8 1,026,111 + HP15_1012 0.84 +1.9 1,026,178 + HP15_1012 0.89 -0.5 1,026,186 - HP15_1012 0.90 -0.6 1,026,228 - +0.1 1,026,228 - -0.3 1,026,228 - +2.2 1,026,228 - -0.4 1,026,230 + -0.1 1,026,230 + -0.1 1,026,251 + +0.2 1,026,278 + -0.6 1,026,348 + +0.1 1,026,358 + -0.3 1,026,436 + HP15_1013 0.12 +0.1 1,026,439 - HP15_1013 0.13 -0.0 1,026,538 - HP15_1013 0.25 -2.2 1,026,575 + HP15_1013 0.29 -0.7 1,026,593 - HP15_1013 0.31 -0.8 1,026,607 - HP15_1013 0.33 +1.6 1,026,612 - HP15_1013 0.34 -0.6 1,026,729 + HP15_1013 0.48 -0.4 1,026,738 + HP15_1013 0.49 +1.2 1,026,740 + HP15_1013 0.49 -0.6 1,026,747 - HP15_1013 0.50 +1.6 1,026,748 - HP15_1013 0.50 +0.6 1,026,855 + HP15_1013 0.63 -2.1 1,026,888 - HP15_1013 0.67 -0.4 1,026,915 + HP15_1013 0.70 -0.2 1,026,940 + HP15_1013 0.73 -0.5 1,027,057 + HP15_1013 0.87 +1.8 1,027,060 - HP15_1013 0.88 +1.5 1,027,062 + HP15_1013 0.88 +0.9 1,027,065 - HP15_1013 0.88 +1.3 1,027,115 + -0.0 1,027,156 + -0.6 1,027,190 + +1.7 1,027,199 + +1.3
Or see this region's nucleotide sequence