Strain Fitness in Dechlorosoma suillum PS around Dsui_3325

Experiment: defined media with 40 mM sodium acetate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_3323 and Dsui_3324 are separated by 92 nucleotidesDsui_3324 and Dsui_3325 are separated by 61 nucleotidesDsui_3325 and Dsui_3326 are separated by 23 nucleotides Dsui_3323: Dsui_3323 - tRNA-guanine transglycosylase, queuosine-34-forming, at 3,562,961 to 3,564,085 _3323 Dsui_3324: Dsui_3324 - preprotein translocase, YajC subunit, at 3,564,178 to 3,564,507 _3324 Dsui_3325: Dsui_3325 - protein-export membrane protein, SecD/SecF family, at 3,564,569 to 3,566,437 _3325 Dsui_3326: Dsui_3326 - protein-export membrane protein, SecD/SecF family, at 3,566,461 to 3,567,408 _3326 Position (kb) 3564 3565 3566 3567Strain fitness (log2 ratio) -1 0 1at 3563.633 kb on + strand, within Dsui_3323at 3563.788 kb on + strandat 3563.789 kb on + strand, within Dsui_3323at 3563.904 kb on - strand, within Dsui_3323at 3563.905 kb on + strand, within Dsui_3323at 3563.970 kb on + strand, within Dsui_3323at 3563.970 kb on + strand, within Dsui_3323at 3564.080 kb on + strandat 3564.080 kb on + strandat 3564.274 kb on + strand, within Dsui_3324at 3564.475 kb on + strandat 3566.399 kb on + strandat 3566.417 kb on + strandat 3566.417 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
remove
3,563,633 + Dsui_3323 0.60 -0.8
3,563,788 + +1.0
3,563,789 + Dsui_3323 0.74 +0.0
3,563,904 - Dsui_3323 0.84 -1.4
3,563,905 + Dsui_3323 0.84 -0.5
3,563,970 + Dsui_3323 0.90 -1.2
3,563,970 + Dsui_3323 0.90 -0.6
3,564,080 + +0.0
3,564,080 + -0.1
3,564,274 + Dsui_3324 0.29 +0.4
3,564,475 + +0.0
3,566,399 + +0.8
3,566,417 + +0.4
3,566,417 + +0.7

Or see this region's nucleotide sequence