Strain Fitness in Dechlorosoma suillum PS around Dsui_3215

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3214 and Dsui_3215 overlap by 8 nucleotidesDsui_3215 and Dsui_3216 are separated by 15 nucleotidesDsui_3216 and Dsui_3217 are separated by 230 nucleotides Dsui_3214: Dsui_3214 - ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing, at 3,449,262 to 3,452,603 _3214 Dsui_3215: Dsui_3215 - Inactivated superfamily I helicase, at 3,452,596 to 3,455,388 _3215 Dsui_3216: Dsui_3216 - ferredoxin, at 3,455,404 to 3,455,727 _3216 Dsui_3217: Dsui_3217 - thioredoxin, at 3,455,958 to 3,456,284 _3217 Position (kb) 3452 3453 3454 3455 3456Strain fitness (log2 ratio) -1 0 1 2 3at 3455.481 kb on - strand, within Dsui_3216at 3455.722 kb on + strandat 3455.730 kb on - strandat 3455.730 kb on - strandat 3455.730 kb on - strandat 3455.866 kb on + strandat 3455.900 kb on + strandat 3456.278 kb on + strandat 3456.278 kb on + strandat 3456.286 kb on + strandat 3456.287 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,455,481 - Dsui_3216 0.24 -0.3
3,455,722 + -0.4
3,455,730 - +3.5
3,455,730 - +0.2
3,455,730 - +0.0
3,455,866 + +1.9
3,455,900 + +0.2
3,456,278 + +0.2
3,456,278 + -0.7
3,456,286 + +0.0
3,456,287 + +0.1

Or see this region's nucleotide sequence