Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2852 and Dsui_2853 are separated by 38 nucleotides Dsui_2853 and Dsui_2854 are separated by 11 nucleotides
Dsui_2852: Dsui_2852 - filamentous hemagglutinin family N-terminal domain protein, at 3,035,230 to 3,040,215
_2852
Dsui_2853: Dsui_2853 - PPIC-type PPIASE family protein, at 3,040,254 to 3,041,102
_2853
Dsui_2854: Dsui_2854 - hemolysin activation/secretion protein, at 3,041,114 to 3,042,748
_2854
Position (kb)
3040
3041
3042 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3039.262 kb on - strand, within Dsui_2852 at 3039.343 kb on + strand, within Dsui_2852 at 3039.356 kb on + strand at 3039.397 kb on - strand, within Dsui_2852 at 3039.413 kb on + strand at 3039.426 kb on - strand, within Dsui_2852 at 3039.443 kb on - strand, within Dsui_2852 at 3039.448 kb on - strand, within Dsui_2852 at 3039.454 kb on - strand, within Dsui_2852 at 3039.474 kb on - strand, within Dsui_2852 at 3039.479 kb on - strand, within Dsui_2852 at 3039.508 kb on - strand, within Dsui_2852 at 3039.516 kb on - strand, within Dsui_2852 at 3039.591 kb on + strand, within Dsui_2852 at 3039.591 kb on + strand at 3039.591 kb on + strand, within Dsui_2852 at 3039.591 kb on + strand, within Dsui_2852 at 3039.592 kb on + strand, within Dsui_2852 at 3039.600 kb on - strand, within Dsui_2852 at 3039.722 kb on + strand at 3039.757 kb on - strand at 3039.763 kb on - strand at 3039.763 kb on - strand at 3039.809 kb on + strand at 3039.817 kb on - strand at 3039.838 kb on - strand at 3039.876 kb on + strand at 3039.962 kb on - strand at 3039.968 kb on - strand at 3039.978 kb on + strand at 3040.032 kb on - strand at 3040.038 kb on + strand at 3040.046 kb on - strand at 3040.051 kb on - strand at 3040.081 kb on - strand at 3040.112 kb on + strand at 3040.115 kb on - strand at 3040.222 kb on + strand at 3040.222 kb on + strand at 3040.297 kb on + strand at 3040.340 kb on + strand, within Dsui_2853 at 3040.536 kb on + strand, within Dsui_2853 at 3040.566 kb on - strand, within Dsui_2853 at 3040.607 kb on - strand, within Dsui_2853 at 3040.635 kb on + strand, within Dsui_2853 at 3040.691 kb on - strand at 3040.747 kb on + strand, within Dsui_2853 at 3040.755 kb on - strand, within Dsui_2853 at 3040.857 kb on + strand, within Dsui_2853 at 3040.875 kb on + strand, within Dsui_2853 at 3040.904 kb on + strand, within Dsui_2853 at 3040.904 kb on + strand at 3040.904 kb on + strand, within Dsui_2853 at 3040.912 kb on - strand, within Dsui_2853 at 3040.912 kb on - strand, within Dsui_2853 at 3040.924 kb on + strand, within Dsui_2853 at 3041.028 kb on - strand at 3041.033 kb on - strand at 3041.033 kb on - strand at 3041.038 kb on - strand at 3041.089 kb on - strand at 3041.089 kb on - strand at 3041.117 kb on + strand at 3041.133 kb on - strand at 3041.149 kb on + strand at 3041.157 kb on - strand at 3041.187 kb on + strand at 3041.257 kb on + strand at 3041.257 kb on + strand at 3041.257 kb on + strand at 3041.257 kb on + strand at 3041.257 kb on + strand at 3041.265 kb on - strand at 3041.265 kb on - strand at 3041.265 kb on - strand at 3041.265 kb on - strand at 3041.265 kb on - strand at 3041.331 kb on - strand at 3041.331 kb on - strand, within Dsui_2854 at 3041.433 kb on - strand, within Dsui_2854 at 3041.442 kb on + strand at 3041.467 kb on + strand, within Dsui_2854 at 3041.475 kb on - strand, within Dsui_2854 at 3041.476 kb on - strand at 3041.589 kb on - strand, within Dsui_2854 at 3041.590 kb on - strand, within Dsui_2854 at 3041.590 kb on - strand, within Dsui_2854 at 3041.612 kb on - strand at 3041.676 kb on + strand, within Dsui_2854 at 3041.695 kb on + strand at 3041.758 kb on - strand, within Dsui_2854 at 3041.784 kb on + strand at 3041.832 kb on - strand, within Dsui_2854 at 3041.860 kb on + strand at 3041.916 kb on + strand, within Dsui_2854 at 3041.953 kb on + strand, within Dsui_2854 at 3041.962 kb on + strand, within Dsui_2854 at 3041.962 kb on + strand, within Dsui_2854 at 3041.970 kb on - strand at 3042.006 kb on + strand at 3042.009 kb on + strand, within Dsui_2854 at 3042.009 kb on + strand, within Dsui_2854 at 3042.009 kb on + strand, within Dsui_2854 at 3042.017 kb on - strand at 3042.025 kb on - strand at 3042.066 kb on + strand, within Dsui_2854 at 3042.072 kb on - strand, within Dsui_2854 at 3042.084 kb on - strand at 3042.085 kb on + strand, within Dsui_2854 at 3042.086 kb on + strand, within Dsui_2854
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 3,039,262 - Dsui_2852 0.81 -1.7 3,039,343 + Dsui_2852 0.82 +0.8 3,039,356 + +2.0 3,039,397 - Dsui_2852 0.84 -1.0 3,039,413 + -0.6 3,039,426 - Dsui_2852 0.84 -0.1 3,039,443 - Dsui_2852 0.84 -0.9 3,039,448 - Dsui_2852 0.85 -1.2 3,039,454 - Dsui_2852 0.85 -0.2 3,039,474 - Dsui_2852 0.85 -0.7 3,039,479 - Dsui_2852 0.85 -0.9 3,039,508 - Dsui_2852 0.86 -1.4 3,039,516 - Dsui_2852 0.86 -0.3 3,039,591 + Dsui_2852 0.87 +0.4 3,039,591 + +0.0 3,039,591 + Dsui_2852 0.87 -0.1 3,039,591 + Dsui_2852 0.87 -0.8 3,039,592 + Dsui_2852 0.87 -0.1 3,039,600 - Dsui_2852 0.88 +0.1 3,039,722 + +0.1 3,039,757 - -0.0 3,039,763 - +1.0 3,039,763 - -0.8 3,039,809 + -0.3 3,039,817 - -0.3 3,039,838 - -1.1 3,039,876 + -0.3 3,039,962 - +0.0 3,039,968 - +0.4 3,039,978 + -1.3 3,040,032 - -2.1 3,040,038 + -0.2 3,040,046 - -0.2 3,040,051 - -1.4 3,040,081 - -0.6 3,040,112 + +1.0 3,040,115 - +0.3 3,040,222 + -0.6 3,040,222 + -2.4 3,040,297 + -1.0 3,040,340 + Dsui_2853 0.10 -0.2 3,040,536 + Dsui_2853 0.33 +0.1 3,040,566 - Dsui_2853 0.37 -1.3 3,040,607 - Dsui_2853 0.42 -0.2 3,040,635 + Dsui_2853 0.45 -1.4 3,040,691 - -0.8 3,040,747 + Dsui_2853 0.58 -1.3 3,040,755 - Dsui_2853 0.59 -0.5 3,040,857 + Dsui_2853 0.71 -1.5 3,040,875 + Dsui_2853 0.73 -0.5 3,040,904 + Dsui_2853 0.77 -0.8 3,040,904 + +0.2 3,040,904 + Dsui_2853 0.77 +0.5 3,040,912 - Dsui_2853 0.78 +0.6 3,040,912 - Dsui_2853 0.78 -0.5 3,040,924 + Dsui_2853 0.79 -1.4 3,041,028 - -1.0 3,041,033 - -0.1 3,041,033 - -0.6 3,041,038 - +0.6 3,041,089 - -0.3 3,041,089 - +0.0 3,041,117 + -0.3 3,041,133 - +0.0 3,041,149 + +0.0 3,041,157 - -1.6 3,041,187 + -0.1 3,041,257 + -0.1 3,041,257 + -0.8 3,041,257 + -1.2 3,041,257 + +0.0 3,041,257 + +0.0 3,041,265 - +3.0 3,041,265 - -2.6 3,041,265 - +0.0 3,041,265 - +0.4 3,041,265 - -0.6 3,041,331 - +2.0 3,041,331 - Dsui_2854 0.13 -1.0 3,041,433 - Dsui_2854 0.20 -0.2 3,041,442 + -0.8 3,041,467 + Dsui_2854 0.22 -0.6 3,041,475 - Dsui_2854 0.22 +0.3 3,041,476 - +0.7 3,041,589 - Dsui_2854 0.29 +0.3 3,041,590 - Dsui_2854 0.29 -1.0 3,041,590 - Dsui_2854 0.29 -0.2 3,041,612 - -0.6 3,041,676 + Dsui_2854 0.34 +1.1 3,041,695 + +0.8 3,041,758 - Dsui_2854 0.39 +0.6 3,041,784 + +1.4 3,041,832 - Dsui_2854 0.44 -0.7 3,041,860 + -0.8 3,041,916 + Dsui_2854 0.49 +1.3 3,041,953 + Dsui_2854 0.51 -0.0 3,041,962 + Dsui_2854 0.52 -1.1 3,041,962 + Dsui_2854 0.52 -0.9 3,041,970 - -0.6 3,042,006 + +1.0 3,042,009 + Dsui_2854 0.55 -0.7 3,042,009 + Dsui_2854 0.55 +0.0 3,042,009 + Dsui_2854 0.55 -0.3 3,042,017 - +0.4 3,042,025 - +1.6 3,042,066 + Dsui_2854 0.58 -1.0 3,042,072 - Dsui_2854 0.59 +0.8 3,042,084 - +1.6 3,042,085 + Dsui_2854 0.59 +0.1 3,042,086 + Dsui_2854 0.59 +0.2
Or see this region's nucleotide sequence