Strain Fitness in Dechlorosoma suillum PS around Dsui_2853

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2852 and Dsui_2853 are separated by 38 nucleotidesDsui_2853 and Dsui_2854 are separated by 11 nucleotides Dsui_2852: Dsui_2852 - filamentous hemagglutinin family N-terminal domain protein, at 3,035,230 to 3,040,215 _2852 Dsui_2853: Dsui_2853 - PPIC-type PPIASE family protein, at 3,040,254 to 3,041,102 _2853 Dsui_2854: Dsui_2854 - hemolysin activation/secretion protein, at 3,041,114 to 3,042,748 _2854 Position (kb) 3040 3041 3042Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3039.262 kb on - strand, within Dsui_2852at 3039.343 kb on + strand, within Dsui_2852at 3039.356 kb on + strandat 3039.397 kb on - strand, within Dsui_2852at 3039.413 kb on + strandat 3039.426 kb on - strand, within Dsui_2852at 3039.443 kb on - strand, within Dsui_2852at 3039.448 kb on - strand, within Dsui_2852at 3039.454 kb on - strand, within Dsui_2852at 3039.474 kb on - strand, within Dsui_2852at 3039.479 kb on - strand, within Dsui_2852at 3039.508 kb on - strand, within Dsui_2852at 3039.516 kb on - strand, within Dsui_2852at 3039.591 kb on + strand, within Dsui_2852at 3039.591 kb on + strandat 3039.591 kb on + strand, within Dsui_2852at 3039.591 kb on + strand, within Dsui_2852at 3039.592 kb on + strand, within Dsui_2852at 3039.600 kb on - strand, within Dsui_2852at 3039.722 kb on + strandat 3039.757 kb on - strandat 3039.763 kb on - strandat 3039.763 kb on - strandat 3039.809 kb on + strandat 3039.817 kb on - strandat 3039.838 kb on - strandat 3039.876 kb on + strandat 3039.962 kb on - strandat 3039.968 kb on - strandat 3039.978 kb on + strandat 3040.032 kb on - strandat 3040.038 kb on + strandat 3040.046 kb on - strandat 3040.051 kb on - strandat 3040.081 kb on - strandat 3040.112 kb on + strandat 3040.115 kb on - strandat 3040.222 kb on + strandat 3040.222 kb on + strandat 3040.297 kb on + strandat 3040.340 kb on + strand, within Dsui_2853at 3040.536 kb on + strand, within Dsui_2853at 3040.566 kb on - strand, within Dsui_2853at 3040.607 kb on - strand, within Dsui_2853at 3040.635 kb on + strand, within Dsui_2853at 3040.691 kb on - strandat 3040.747 kb on + strand, within Dsui_2853at 3040.755 kb on - strand, within Dsui_2853at 3040.857 kb on + strand, within Dsui_2853at 3040.875 kb on + strand, within Dsui_2853at 3040.904 kb on + strand, within Dsui_2853at 3040.904 kb on + strandat 3040.904 kb on + strand, within Dsui_2853at 3040.912 kb on - strand, within Dsui_2853at 3040.912 kb on - strand, within Dsui_2853at 3040.924 kb on + strand, within Dsui_2853at 3041.028 kb on - strandat 3041.033 kb on - strandat 3041.033 kb on - strandat 3041.038 kb on - strandat 3041.089 kb on - strandat 3041.089 kb on - strandat 3041.117 kb on + strandat 3041.133 kb on - strandat 3041.149 kb on + strandat 3041.157 kb on - strandat 3041.187 kb on + strandat 3041.257 kb on + strandat 3041.257 kb on + strandat 3041.257 kb on + strandat 3041.257 kb on + strandat 3041.257 kb on + strandat 3041.265 kb on - strandat 3041.265 kb on - strandat 3041.265 kb on - strandat 3041.265 kb on - strandat 3041.265 kb on - strandat 3041.331 kb on - strandat 3041.331 kb on - strand, within Dsui_2854at 3041.433 kb on - strand, within Dsui_2854at 3041.442 kb on + strandat 3041.467 kb on + strand, within Dsui_2854at 3041.475 kb on - strand, within Dsui_2854at 3041.476 kb on - strandat 3041.589 kb on - strand, within Dsui_2854at 3041.590 kb on - strand, within Dsui_2854at 3041.590 kb on - strand, within Dsui_2854at 3041.612 kb on - strandat 3041.676 kb on + strand, within Dsui_2854at 3041.695 kb on + strandat 3041.758 kb on - strand, within Dsui_2854at 3041.784 kb on + strandat 3041.832 kb on - strand, within Dsui_2854at 3041.860 kb on + strandat 3041.916 kb on + strand, within Dsui_2854at 3041.953 kb on + strand, within Dsui_2854at 3041.962 kb on + strand, within Dsui_2854at 3041.962 kb on + strand, within Dsui_2854at 3041.970 kb on - strandat 3042.006 kb on + strandat 3042.009 kb on + strand, within Dsui_2854at 3042.009 kb on + strand, within Dsui_2854at 3042.009 kb on + strand, within Dsui_2854at 3042.017 kb on - strandat 3042.025 kb on - strandat 3042.066 kb on + strand, within Dsui_2854at 3042.072 kb on - strand, within Dsui_2854at 3042.084 kb on - strandat 3042.085 kb on + strand, within Dsui_2854at 3042.086 kb on + strand, within Dsui_2854

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,039,262 - Dsui_2852 0.81 -1.7
3,039,343 + Dsui_2852 0.82 +0.8
3,039,356 + +2.0
3,039,397 - Dsui_2852 0.84 -1.0
3,039,413 + -0.6
3,039,426 - Dsui_2852 0.84 -0.1
3,039,443 - Dsui_2852 0.84 -0.9
3,039,448 - Dsui_2852 0.85 -1.2
3,039,454 - Dsui_2852 0.85 -0.2
3,039,474 - Dsui_2852 0.85 -0.7
3,039,479 - Dsui_2852 0.85 -0.9
3,039,508 - Dsui_2852 0.86 -1.4
3,039,516 - Dsui_2852 0.86 -0.3
3,039,591 + Dsui_2852 0.87 +0.4
3,039,591 + +0.0
3,039,591 + Dsui_2852 0.87 -0.1
3,039,591 + Dsui_2852 0.87 -0.8
3,039,592 + Dsui_2852 0.87 -0.1
3,039,600 - Dsui_2852 0.88 +0.1
3,039,722 + +0.1
3,039,757 - -0.0
3,039,763 - +1.0
3,039,763 - -0.8
3,039,809 + -0.3
3,039,817 - -0.3
3,039,838 - -1.1
3,039,876 + -0.3
3,039,962 - +0.0
3,039,968 - +0.4
3,039,978 + -1.3
3,040,032 - -2.1
3,040,038 + -0.2
3,040,046 - -0.2
3,040,051 - -1.4
3,040,081 - -0.6
3,040,112 + +1.0
3,040,115 - +0.3
3,040,222 + -0.6
3,040,222 + -2.4
3,040,297 + -1.0
3,040,340 + Dsui_2853 0.10 -0.2
3,040,536 + Dsui_2853 0.33 +0.1
3,040,566 - Dsui_2853 0.37 -1.3
3,040,607 - Dsui_2853 0.42 -0.2
3,040,635 + Dsui_2853 0.45 -1.4
3,040,691 - -0.8
3,040,747 + Dsui_2853 0.58 -1.3
3,040,755 - Dsui_2853 0.59 -0.5
3,040,857 + Dsui_2853 0.71 -1.5
3,040,875 + Dsui_2853 0.73 -0.5
3,040,904 + Dsui_2853 0.77 -0.8
3,040,904 + +0.2
3,040,904 + Dsui_2853 0.77 +0.5
3,040,912 - Dsui_2853 0.78 +0.6
3,040,912 - Dsui_2853 0.78 -0.5
3,040,924 + Dsui_2853 0.79 -1.4
3,041,028 - -1.0
3,041,033 - -0.1
3,041,033 - -0.6
3,041,038 - +0.6
3,041,089 - -0.3
3,041,089 - +0.0
3,041,117 + -0.3
3,041,133 - +0.0
3,041,149 + +0.0
3,041,157 - -1.6
3,041,187 + -0.1
3,041,257 + -0.1
3,041,257 + -0.8
3,041,257 + -1.2
3,041,257 + +0.0
3,041,257 + +0.0
3,041,265 - +3.0
3,041,265 - -2.6
3,041,265 - +0.0
3,041,265 - +0.4
3,041,265 - -0.6
3,041,331 - +2.0
3,041,331 - Dsui_2854 0.13 -1.0
3,041,433 - Dsui_2854 0.20 -0.2
3,041,442 + -0.8
3,041,467 + Dsui_2854 0.22 -0.6
3,041,475 - Dsui_2854 0.22 +0.3
3,041,476 - +0.7
3,041,589 - Dsui_2854 0.29 +0.3
3,041,590 - Dsui_2854 0.29 -1.0
3,041,590 - Dsui_2854 0.29 -0.2
3,041,612 - -0.6
3,041,676 + Dsui_2854 0.34 +1.1
3,041,695 + +0.8
3,041,758 - Dsui_2854 0.39 +0.6
3,041,784 + +1.4
3,041,832 - Dsui_2854 0.44 -0.7
3,041,860 + -0.8
3,041,916 + Dsui_2854 0.49 +1.3
3,041,953 + Dsui_2854 0.51 -0.0
3,041,962 + Dsui_2854 0.52 -1.1
3,041,962 + Dsui_2854 0.52 -0.9
3,041,970 - -0.6
3,042,006 + +1.0
3,042,009 + Dsui_2854 0.55 -0.7
3,042,009 + Dsui_2854 0.55 +0.0
3,042,009 + Dsui_2854 0.55 -0.3
3,042,017 - +0.4
3,042,025 - +1.6
3,042,066 + Dsui_2854 0.58 -1.0
3,042,072 - Dsui_2854 0.59 +0.8
3,042,084 - +1.6
3,042,085 + Dsui_2854 0.59 +0.1
3,042,086 + Dsui_2854 0.59 +0.2

Or see this region's nucleotide sequence