Strain Fitness in Dechlorosoma suillum PS around Dsui_2846

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2845 and Dsui_2846 are separated by 12 nucleotidesDsui_2846 and Dsui_2847 overlap by 8 nucleotides Dsui_2845: Dsui_2845 - DNA replication protein, at 3,023,037 to 3,023,771 _2845 Dsui_2846: Dsui_2846 - ATPase, at 3,023,784 to 3,024,845 _2846 Dsui_2847: Dsui_2847 - Mu transposase/integrase, at 3,024,838 to 3,027,498 _2847 Position (kb) 3023 3024 3025Strain fitness (log2 ratio) -2 -1 0 1 2at 3023.789 kb on + strandat 3023.824 kb on + strandat 3023.824 kb on + strandat 3023.825 kb on + strandat 3023.825 kb on + strandat 3023.832 kb on - strandat 3023.832 kb on - strandat 3023.834 kb on + strandat 3023.842 kb on - strandat 3023.969 kb on + strand, within Dsui_2846at 3023.969 kb on + strand, within Dsui_2846at 3023.969 kb on + strand, within Dsui_2846at 3023.969 kb on + strand, within Dsui_2846at 3023.977 kb on - strand, within Dsui_2846at 3023.977 kb on - strand, within Dsui_2846at 3023.977 kb on - strandat 3024.066 kb on + strand, within Dsui_2846at 3024.073 kb on + strand, within Dsui_2846at 3024.073 kb on + strand, within Dsui_2846at 3024.164 kb on + strand, within Dsui_2846at 3024.172 kb on - strand, within Dsui_2846at 3024.177 kb on - strand, within Dsui_2846at 3024.179 kb on - strand, within Dsui_2846at 3024.217 kb on + strand, within Dsui_2846at 3024.260 kb on + strand, within Dsui_2846at 3024.298 kb on - strand, within Dsui_2846at 3024.374 kb on - strand, within Dsui_2846at 3024.381 kb on + strandat 3024.389 kb on + strand, within Dsui_2846at 3024.389 kb on + strandat 3024.394 kb on + strand, within Dsui_2846at 3024.394 kb on + strand, within Dsui_2846at 3024.394 kb on + strand, within Dsui_2846at 3024.397 kb on - strand, within Dsui_2846at 3024.404 kb on + strand, within Dsui_2846at 3024.430 kb on + strand, within Dsui_2846at 3024.431 kb on - strand, within Dsui_2846at 3024.438 kb on - strand, within Dsui_2846at 3024.438 kb on - strand, within Dsui_2846at 3024.450 kb on + strand, within Dsui_2846at 3024.487 kb on - strand, within Dsui_2846at 3024.518 kb on + strand, within Dsui_2846at 3024.585 kb on - strand, within Dsui_2846at 3024.589 kb on + strand, within Dsui_2846at 3024.599 kb on + strand, within Dsui_2846at 3024.607 kb on - strand, within Dsui_2846at 3024.622 kb on - strandat 3024.629 kb on - strand, within Dsui_2846at 3024.656 kb on - strand, within Dsui_2846at 3024.656 kb on - strand, within Dsui_2846at 3024.671 kb on - strand, within Dsui_2846at 3024.708 kb on - strand, within Dsui_2846at 3024.774 kb on + strandat 3024.820 kb on - strandat 3024.823 kb on + strandat 3024.825 kb on - strandat 3024.825 kb on - strandat 3024.831 kb on - strandat 3024.898 kb on - strandat 3024.917 kb on - strandat 3024.922 kb on - strandat 3025.039 kb on - strandat 3025.065 kb on - strandat 3025.065 kb on - strandat 3025.065 kb on - strandat 3025.065 kb on - strandat 3025.229 kb on - strand, within Dsui_2847at 3025.250 kb on - strand, within Dsui_2847at 3025.287 kb on + strand, within Dsui_2847at 3025.309 kb on + strand, within Dsui_2847at 3025.310 kb on + strand, within Dsui_2847at 3025.322 kb on + strand, within Dsui_2847at 3025.330 kb on - strand, within Dsui_2847at 3025.331 kb on + strand, within Dsui_2847at 3025.335 kb on + strand, within Dsui_2847at 3025.350 kb on - strand, within Dsui_2847at 3025.438 kb on + strand, within Dsui_2847at 3025.446 kb on - strand, within Dsui_2847at 3025.481 kb on - strand, within Dsui_2847at 3025.538 kb on - strand, within Dsui_2847at 3025.631 kb on - strand, within Dsui_2847at 3025.696 kb on + strand, within Dsui_2847at 3025.696 kb on + strand, within Dsui_2847at 3025.696 kb on + strand, within Dsui_2847at 3025.731 kb on - strand, within Dsui_2847at 3025.761 kb on - strandat 3025.761 kb on - strand, within Dsui_2847at 3025.776 kb on + strand, within Dsui_2847at 3025.800 kb on - strand, within Dsui_2847

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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3,023,789 + -0.4
3,023,824 + -0.1
3,023,824 + -0.5
3,023,825 + -0.8
3,023,825 + -0.2
3,023,832 - -0.6
3,023,832 - -0.4
3,023,834 + -1.0
3,023,842 - +1.3
3,023,969 + Dsui_2846 0.17 +0.0
3,023,969 + Dsui_2846 0.17 -0.5
3,023,969 + Dsui_2846 0.17 -0.1
3,023,969 + Dsui_2846 0.17 +0.0
3,023,977 - Dsui_2846 0.18 -1.3
3,023,977 - Dsui_2846 0.18 -0.1
3,023,977 - +0.7
3,024,066 + Dsui_2846 0.27 -0.6
3,024,073 + Dsui_2846 0.27 +1.5
3,024,073 + Dsui_2846 0.27 +0.3
3,024,164 + Dsui_2846 0.36 -1.6
3,024,172 - Dsui_2846 0.37 -1.6
3,024,177 - Dsui_2846 0.37 -1.4
3,024,179 - Dsui_2846 0.37 -1.3
3,024,217 + Dsui_2846 0.41 -0.4
3,024,260 + Dsui_2846 0.45 -0.1
3,024,298 - Dsui_2846 0.48 -0.8
3,024,374 - Dsui_2846 0.56 -1.3
3,024,381 + +0.2
3,024,389 + Dsui_2846 0.57 +0.6
3,024,389 + +0.0
3,024,394 + Dsui_2846 0.57 +0.3
3,024,394 + Dsui_2846 0.57 +0.4
3,024,394 + Dsui_2846 0.57 -0.6
3,024,397 - Dsui_2846 0.58 -1.0
3,024,404 + Dsui_2846 0.58 +2.6
3,024,430 + Dsui_2846 0.61 -0.2
3,024,431 - Dsui_2846 0.61 -0.8
3,024,438 - Dsui_2846 0.62 -1.2
3,024,438 - Dsui_2846 0.62 +0.2
3,024,450 + Dsui_2846 0.63 -0.8
3,024,487 - Dsui_2846 0.66 +0.0
3,024,518 + Dsui_2846 0.69 -2.0
3,024,585 - Dsui_2846 0.75 +0.1
3,024,589 + Dsui_2846 0.76 -1.4
3,024,599 + Dsui_2846 0.77 -0.3
3,024,607 - Dsui_2846 0.77 -1.2
3,024,622 - -0.6
3,024,629 - Dsui_2846 0.80 -0.3
3,024,656 - Dsui_2846 0.82 -0.3
3,024,656 - Dsui_2846 0.82 -0.6
3,024,671 - Dsui_2846 0.84 -0.8
3,024,708 - Dsui_2846 0.87 +0.0
3,024,774 + +1.0
3,024,820 - -0.6
3,024,823 + -0.3
3,024,825 - -0.3
3,024,825 - -0.1
3,024,831 - -0.3
3,024,898 - +0.0
3,024,917 - -0.2
3,024,922 - -0.0
3,025,039 - -0.4
3,025,065 - -0.5
3,025,065 - -0.5
3,025,065 - -0.5
3,025,065 - +0.6
3,025,229 - Dsui_2847 0.15 -1.0
3,025,250 - Dsui_2847 0.15 -1.4
3,025,287 + Dsui_2847 0.17 -0.4
3,025,309 + Dsui_2847 0.18 -0.4
3,025,310 + Dsui_2847 0.18 -0.0
3,025,322 + Dsui_2847 0.18 -0.7
3,025,330 - Dsui_2847 0.18 -1.3
3,025,331 + Dsui_2847 0.19 +0.4
3,025,335 + Dsui_2847 0.19 -0.4
3,025,350 - Dsui_2847 0.19 -0.3
3,025,438 + Dsui_2847 0.23 -0.1
3,025,446 - Dsui_2847 0.23 -0.1
3,025,481 - Dsui_2847 0.24 +0.2
3,025,538 - Dsui_2847 0.26 +0.4
3,025,631 - Dsui_2847 0.30 -0.6
3,025,696 + Dsui_2847 0.32 -0.5
3,025,696 + Dsui_2847 0.32 +0.0
3,025,696 + Dsui_2847 0.32 -0.2
3,025,731 - Dsui_2847 0.34 -0.3
3,025,761 - -1.0
3,025,761 - Dsui_2847 0.35 -1.0
3,025,776 + Dsui_2847 0.35 +0.0
3,025,800 - Dsui_2847 0.36 -1.7

Or see this region's nucleotide sequence