Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2845 and Dsui_2846 are separated by 12 nucleotides Dsui_2846 and Dsui_2847 overlap by 8 nucleotides
Dsui_2845: Dsui_2845 - DNA replication protein, at 3,023,037 to 3,023,771
_2845
Dsui_2846: Dsui_2846 - ATPase, at 3,023,784 to 3,024,845
_2846
Dsui_2847: Dsui_2847 - Mu transposase/integrase, at 3,024,838 to 3,027,498
_2847
Position (kb)
3023
3024
3025 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3023.789 kb on + strand at 3023.824 kb on + strand at 3023.824 kb on + strand at 3023.825 kb on + strand at 3023.825 kb on + strand at 3023.832 kb on - strand at 3023.832 kb on - strand at 3023.834 kb on + strand at 3023.842 kb on - strand at 3023.969 kb on + strand, within Dsui_2846 at 3023.969 kb on + strand, within Dsui_2846 at 3023.969 kb on + strand, within Dsui_2846 at 3023.969 kb on + strand, within Dsui_2846 at 3023.977 kb on - strand, within Dsui_2846 at 3023.977 kb on - strand, within Dsui_2846 at 3023.977 kb on - strand at 3024.066 kb on + strand, within Dsui_2846 at 3024.073 kb on + strand, within Dsui_2846 at 3024.073 kb on + strand, within Dsui_2846 at 3024.164 kb on + strand, within Dsui_2846 at 3024.172 kb on - strand, within Dsui_2846 at 3024.177 kb on - strand, within Dsui_2846 at 3024.179 kb on - strand, within Dsui_2846 at 3024.217 kb on + strand, within Dsui_2846 at 3024.260 kb on + strand, within Dsui_2846 at 3024.298 kb on - strand, within Dsui_2846 at 3024.374 kb on - strand, within Dsui_2846 at 3024.381 kb on + strand at 3024.389 kb on + strand, within Dsui_2846 at 3024.389 kb on + strand at 3024.394 kb on + strand, within Dsui_2846 at 3024.394 kb on + strand, within Dsui_2846 at 3024.394 kb on + strand, within Dsui_2846 at 3024.397 kb on - strand, within Dsui_2846 at 3024.404 kb on + strand, within Dsui_2846 at 3024.430 kb on + strand, within Dsui_2846 at 3024.431 kb on - strand, within Dsui_2846 at 3024.438 kb on - strand, within Dsui_2846 at 3024.438 kb on - strand, within Dsui_2846 at 3024.450 kb on + strand, within Dsui_2846 at 3024.487 kb on - strand, within Dsui_2846 at 3024.518 kb on + strand, within Dsui_2846 at 3024.585 kb on - strand, within Dsui_2846 at 3024.589 kb on + strand, within Dsui_2846 at 3024.599 kb on + strand, within Dsui_2846 at 3024.607 kb on - strand, within Dsui_2846 at 3024.622 kb on - strand at 3024.629 kb on - strand, within Dsui_2846 at 3024.656 kb on - strand, within Dsui_2846 at 3024.656 kb on - strand, within Dsui_2846 at 3024.671 kb on - strand, within Dsui_2846 at 3024.708 kb on - strand, within Dsui_2846 at 3024.774 kb on + strand at 3024.820 kb on - strand at 3024.823 kb on + strand at 3024.825 kb on - strand at 3024.825 kb on - strand at 3024.831 kb on - strand at 3024.898 kb on - strand at 3024.917 kb on - strand at 3024.922 kb on - strand at 3025.039 kb on - strand at 3025.065 kb on - strand at 3025.065 kb on - strand at 3025.065 kb on - strand at 3025.065 kb on - strand at 3025.229 kb on - strand, within Dsui_2847 at 3025.250 kb on - strand, within Dsui_2847 at 3025.287 kb on + strand, within Dsui_2847 at 3025.309 kb on + strand, within Dsui_2847 at 3025.310 kb on + strand, within Dsui_2847 at 3025.322 kb on + strand, within Dsui_2847 at 3025.330 kb on - strand, within Dsui_2847 at 3025.331 kb on + strand, within Dsui_2847 at 3025.335 kb on + strand, within Dsui_2847 at 3025.350 kb on - strand, within Dsui_2847 at 3025.438 kb on + strand, within Dsui_2847 at 3025.446 kb on - strand, within Dsui_2847 at 3025.481 kb on - strand, within Dsui_2847 at 3025.538 kb on - strand, within Dsui_2847 at 3025.631 kb on - strand, within Dsui_2847 at 3025.696 kb on + strand, within Dsui_2847 at 3025.696 kb on + strand, within Dsui_2847 at 3025.696 kb on + strand, within Dsui_2847 at 3025.731 kb on - strand, within Dsui_2847 at 3025.761 kb on - strand at 3025.761 kb on - strand, within Dsui_2847 at 3025.776 kb on + strand, within Dsui_2847 at 3025.800 kb on - strand, within Dsui_2847
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 3,023,789 + -0.4 3,023,824 + -0.1 3,023,824 + -0.5 3,023,825 + -0.8 3,023,825 + -0.2 3,023,832 - -0.6 3,023,832 - -0.4 3,023,834 + -1.0 3,023,842 - +1.3 3,023,969 + Dsui_2846 0.17 +0.0 3,023,969 + Dsui_2846 0.17 -0.5 3,023,969 + Dsui_2846 0.17 -0.1 3,023,969 + Dsui_2846 0.17 +0.0 3,023,977 - Dsui_2846 0.18 -1.3 3,023,977 - Dsui_2846 0.18 -0.1 3,023,977 - +0.7 3,024,066 + Dsui_2846 0.27 -0.6 3,024,073 + Dsui_2846 0.27 +1.5 3,024,073 + Dsui_2846 0.27 +0.3 3,024,164 + Dsui_2846 0.36 -1.6 3,024,172 - Dsui_2846 0.37 -1.6 3,024,177 - Dsui_2846 0.37 -1.4 3,024,179 - Dsui_2846 0.37 -1.3 3,024,217 + Dsui_2846 0.41 -0.4 3,024,260 + Dsui_2846 0.45 -0.1 3,024,298 - Dsui_2846 0.48 -0.8 3,024,374 - Dsui_2846 0.56 -1.3 3,024,381 + +0.2 3,024,389 + Dsui_2846 0.57 +0.6 3,024,389 + +0.0 3,024,394 + Dsui_2846 0.57 +0.3 3,024,394 + Dsui_2846 0.57 +0.4 3,024,394 + Dsui_2846 0.57 -0.6 3,024,397 - Dsui_2846 0.58 -1.0 3,024,404 + Dsui_2846 0.58 +2.6 3,024,430 + Dsui_2846 0.61 -0.2 3,024,431 - Dsui_2846 0.61 -0.8 3,024,438 - Dsui_2846 0.62 -1.2 3,024,438 - Dsui_2846 0.62 +0.2 3,024,450 + Dsui_2846 0.63 -0.8 3,024,487 - Dsui_2846 0.66 +0.0 3,024,518 + Dsui_2846 0.69 -2.0 3,024,585 - Dsui_2846 0.75 +0.1 3,024,589 + Dsui_2846 0.76 -1.4 3,024,599 + Dsui_2846 0.77 -0.3 3,024,607 - Dsui_2846 0.77 -1.2 3,024,622 - -0.6 3,024,629 - Dsui_2846 0.80 -0.3 3,024,656 - Dsui_2846 0.82 -0.3 3,024,656 - Dsui_2846 0.82 -0.6 3,024,671 - Dsui_2846 0.84 -0.8 3,024,708 - Dsui_2846 0.87 +0.0 3,024,774 + +1.0 3,024,820 - -0.6 3,024,823 + -0.3 3,024,825 - -0.3 3,024,825 - -0.1 3,024,831 - -0.3 3,024,898 - +0.0 3,024,917 - -0.2 3,024,922 - -0.0 3,025,039 - -0.4 3,025,065 - -0.5 3,025,065 - -0.5 3,025,065 - -0.5 3,025,065 - +0.6 3,025,229 - Dsui_2847 0.15 -1.0 3,025,250 - Dsui_2847 0.15 -1.4 3,025,287 + Dsui_2847 0.17 -0.4 3,025,309 + Dsui_2847 0.18 -0.4 3,025,310 + Dsui_2847 0.18 -0.0 3,025,322 + Dsui_2847 0.18 -0.7 3,025,330 - Dsui_2847 0.18 -1.3 3,025,331 + Dsui_2847 0.19 +0.4 3,025,335 + Dsui_2847 0.19 -0.4 3,025,350 - Dsui_2847 0.19 -0.3 3,025,438 + Dsui_2847 0.23 -0.1 3,025,446 - Dsui_2847 0.23 -0.1 3,025,481 - Dsui_2847 0.24 +0.2 3,025,538 - Dsui_2847 0.26 +0.4 3,025,631 - Dsui_2847 0.30 -0.6 3,025,696 + Dsui_2847 0.32 -0.5 3,025,696 + Dsui_2847 0.32 +0.0 3,025,696 + Dsui_2847 0.32 -0.2 3,025,731 - Dsui_2847 0.34 -0.3 3,025,761 - -1.0 3,025,761 - Dsui_2847 0.35 -1.0 3,025,776 + Dsui_2847 0.35 +0.0 3,025,800 - Dsui_2847 0.36 -1.7
Or see this region's nucleotide sequence