Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2637 and Dsui_2638 are separated by 80 nucleotides Dsui_2638 and Dsui_2639 are separated by 21 nucleotides Dsui_2639 and Dsui_2640 are separated by 96 nucleotides Dsui_2640 and Dsui_2641 are separated by 29 nucleotides
Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084
_2637
Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509
_2638
Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971
_2639
Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730
_2640
Dsui_2641: Dsui_2641 - putative multicopper oxidase, at 2,792,760 to 2,794,169
_2641
Position (kb)
2792
2793 Strain fitness (log2 ratio)
-1
0
1 at 2791.135 kb on + strand at 2791.143 kb on + strand at 2791.151 kb on - strand at 2791.210 kb on - strand, within Dsui_2638 at 2791.306 kb on + strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.369 kb on - strand, within Dsui_2638 at 2791.439 kb on + strand, within Dsui_2638 at 2791.460 kb on + strand, within Dsui_2638 at 2791.503 kb on - strand at 2791.546 kb on + strand at 2791.564 kb on + strand at 2791.604 kb on - strand, within Dsui_2639 at 2791.662 kb on - strand, within Dsui_2639 at 2791.728 kb on + strand, within Dsui_2639 at 2791.773 kb on - strand, within Dsui_2639 at 2791.801 kb on - strand, within Dsui_2639 at 2791.884 kb on - strand, within Dsui_2639 at 2791.928 kb on - strand at 2791.958 kb on - strand at 2791.998 kb on - strand at 2792.011 kb on - strand at 2792.065 kb on + strand at 2792.065 kb on + strand at 2792.073 kb on - strand at 2792.088 kb on + strand at 2792.096 kb on - strand at 2792.096 kb on - strand at 2792.103 kb on - strand at 2792.240 kb on + strand, within Dsui_2640 at 2792.256 kb on - strand, within Dsui_2640 at 2792.320 kb on + strand, within Dsui_2640 at 2792.431 kb on - strand, within Dsui_2640 at 2792.436 kb on - strand, within Dsui_2640 at 2792.510 kb on - strand, within Dsui_2640 at 2792.708 kb on + strand at 2792.754 kb on - strand at 2793.016 kb on - strand, within Dsui_2641 at 2793.017 kb on - strand, within Dsui_2641 at 2793.072 kb on + strand, within Dsui_2641 at 2793.103 kb on - strand, within Dsui_2641 at 2793.114 kb on - strand, within Dsui_2641 at 2793.175 kb on + strand, within Dsui_2641 at 2793.473 kb on + strand, within Dsui_2641 at 2793.490 kb on + strand, within Dsui_2641 at 2793.497 kb on + strand, within Dsui_2641 at 2793.497 kb on + strand, within Dsui_2641 at 2793.505 kb on - strand, within Dsui_2641 at 2793.539 kb on + strand, within Dsui_2641
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,791,135 + -0.1 2,791,143 + +0.3 2,791,151 - -0.1 2,791,210 - Dsui_2638 0.13 +0.3 2,791,306 + Dsui_2638 0.41 -0.0 2,791,369 - Dsui_2638 0.59 -0.2 2,791,369 - Dsui_2638 0.59 -0.6 2,791,439 + Dsui_2638 0.79 -0.0 2,791,460 + Dsui_2638 0.86 -1.6 2,791,503 - -0.5 2,791,546 + +0.4 2,791,564 + -0.4 2,791,604 - Dsui_2639 0.17 -0.4 2,791,662 - Dsui_2639 0.30 -0.5 2,791,728 + Dsui_2639 0.45 +1.0 2,791,773 - Dsui_2639 0.55 -0.1 2,791,801 - Dsui_2639 0.61 +0.5 2,791,884 - Dsui_2639 0.80 -0.8 2,791,928 - -0.9 2,791,958 - -0.5 2,791,998 - -0.4 2,792,011 - +0.1 2,792,065 + -0.7 2,792,065 + -0.1 2,792,073 - +0.6 2,792,088 + +0.6 2,792,096 - -0.2 2,792,096 - -0.8 2,792,103 - +0.8 2,792,240 + Dsui_2640 0.26 -1.6 2,792,256 - Dsui_2640 0.28 +0.9 2,792,320 + Dsui_2640 0.38 -0.6 2,792,431 - Dsui_2640 0.55 -0.4 2,792,436 - Dsui_2640 0.56 -0.3 2,792,510 - Dsui_2640 0.67 -0.9 2,792,708 + +0.0 2,792,754 - +0.2 2,793,016 - Dsui_2641 0.18 +0.0 2,793,017 - Dsui_2641 0.18 -0.3 2,793,072 + Dsui_2641 0.22 -0.0 2,793,103 - Dsui_2641 0.24 -0.7 2,793,114 - Dsui_2641 0.25 -0.1 2,793,175 + Dsui_2641 0.29 -1.0 2,793,473 + Dsui_2641 0.51 -1.0 2,793,490 + Dsui_2641 0.52 -0.8 2,793,497 + Dsui_2641 0.52 -1.0 2,793,497 + Dsui_2641 0.52 +0.2 2,793,505 - Dsui_2641 0.53 +1.2 2,793,539 + Dsui_2641 0.55 -0.8
Or see this region's nucleotide sequence