Strain Fitness in Dechlorosoma suillum PS around Dsui_2640

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2637 and Dsui_2638 are separated by 80 nucleotidesDsui_2638 and Dsui_2639 are separated by 21 nucleotidesDsui_2639 and Dsui_2640 are separated by 96 nucleotidesDsui_2640 and Dsui_2641 are separated by 29 nucleotides Dsui_2637: Dsui_2637 - outer membrane protein, at 2,789,813 to 2,791,084 _2637 Dsui_2638: Dsui_2638 - hypothetical protein, at 2,791,165 to 2,791,509 _2638 Dsui_2639: Dsui_2639 - putative metal-binding protein, at 2,791,531 to 2,791,971 _2639 Dsui_2640: Dsui_2640 - Cytochrome c, at 2,792,068 to 2,792,730 _2640 Dsui_2641: Dsui_2641 - putative multicopper oxidase, at 2,792,760 to 2,794,169 _2641 Position (kb) 2792 2793Strain fitness (log2 ratio) -1 0 1at 2791.135 kb on + strandat 2791.143 kb on + strandat 2791.151 kb on - strandat 2791.210 kb on - strand, within Dsui_2638at 2791.306 kb on + strand, within Dsui_2638at 2791.369 kb on - strand, within Dsui_2638at 2791.369 kb on - strand, within Dsui_2638at 2791.439 kb on + strand, within Dsui_2638at 2791.460 kb on + strand, within Dsui_2638at 2791.503 kb on - strandat 2791.546 kb on + strandat 2791.564 kb on + strandat 2791.604 kb on - strand, within Dsui_2639at 2791.662 kb on - strand, within Dsui_2639at 2791.728 kb on + strand, within Dsui_2639at 2791.773 kb on - strand, within Dsui_2639at 2791.801 kb on - strand, within Dsui_2639at 2791.884 kb on - strand, within Dsui_2639at 2791.928 kb on - strandat 2791.958 kb on - strandat 2791.998 kb on - strandat 2792.011 kb on - strandat 2792.065 kb on + strandat 2792.065 kb on + strandat 2792.073 kb on - strandat 2792.088 kb on + strandat 2792.096 kb on - strandat 2792.096 kb on - strandat 2792.103 kb on - strandat 2792.240 kb on + strand, within Dsui_2640at 2792.256 kb on - strand, within Dsui_2640at 2792.320 kb on + strand, within Dsui_2640at 2792.431 kb on - strand, within Dsui_2640at 2792.436 kb on - strand, within Dsui_2640at 2792.510 kb on - strand, within Dsui_2640at 2792.708 kb on + strandat 2792.754 kb on - strandat 2793.016 kb on - strand, within Dsui_2641at 2793.017 kb on - strand, within Dsui_2641at 2793.072 kb on + strand, within Dsui_2641at 2793.103 kb on - strand, within Dsui_2641at 2793.114 kb on - strand, within Dsui_2641at 2793.175 kb on + strand, within Dsui_2641at 2793.473 kb on + strand, within Dsui_2641at 2793.490 kb on + strand, within Dsui_2641at 2793.497 kb on + strand, within Dsui_2641at 2793.497 kb on + strand, within Dsui_2641at 2793.505 kb on - strand, within Dsui_2641at 2793.539 kb on + strand, within Dsui_2641

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,791,135 + -0.1
2,791,143 + +0.3
2,791,151 - -0.1
2,791,210 - Dsui_2638 0.13 +0.3
2,791,306 + Dsui_2638 0.41 -0.0
2,791,369 - Dsui_2638 0.59 -0.2
2,791,369 - Dsui_2638 0.59 -0.6
2,791,439 + Dsui_2638 0.79 -0.0
2,791,460 + Dsui_2638 0.86 -1.6
2,791,503 - -0.5
2,791,546 + +0.4
2,791,564 + -0.4
2,791,604 - Dsui_2639 0.17 -0.4
2,791,662 - Dsui_2639 0.30 -0.5
2,791,728 + Dsui_2639 0.45 +1.0
2,791,773 - Dsui_2639 0.55 -0.1
2,791,801 - Dsui_2639 0.61 +0.5
2,791,884 - Dsui_2639 0.80 -0.8
2,791,928 - -0.9
2,791,958 - -0.5
2,791,998 - -0.4
2,792,011 - +0.1
2,792,065 + -0.7
2,792,065 + -0.1
2,792,073 - +0.6
2,792,088 + +0.6
2,792,096 - -0.2
2,792,096 - -0.8
2,792,103 - +0.8
2,792,240 + Dsui_2640 0.26 -1.6
2,792,256 - Dsui_2640 0.28 +0.9
2,792,320 + Dsui_2640 0.38 -0.6
2,792,431 - Dsui_2640 0.55 -0.4
2,792,436 - Dsui_2640 0.56 -0.3
2,792,510 - Dsui_2640 0.67 -0.9
2,792,708 + +0.0
2,792,754 - +0.2
2,793,016 - Dsui_2641 0.18 +0.0
2,793,017 - Dsui_2641 0.18 -0.3
2,793,072 + Dsui_2641 0.22 -0.0
2,793,103 - Dsui_2641 0.24 -0.7
2,793,114 - Dsui_2641 0.25 -0.1
2,793,175 + Dsui_2641 0.29 -1.0
2,793,473 + Dsui_2641 0.51 -1.0
2,793,490 + Dsui_2641 0.52 -0.8
2,793,497 + Dsui_2641 0.52 -1.0
2,793,497 + Dsui_2641 0.52 +0.2
2,793,505 - Dsui_2641 0.53 +1.2
2,793,539 + Dsui_2641 0.55 -0.8

Or see this region's nucleotide sequence