Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2575 and Dsui_2576 are separated by 13 nucleotides Dsui_2576 and Dsui_2577 overlap by 4 nucleotides Dsui_2577 and Dsui_2578 are separated by 349 nucleotides Dsui_2578 and Dsui_2579 are separated by 14 nucleotides
Dsui_2575: Dsui_2575 - hypothetical protein, at 2,725,416 to 2,726,186
_2575
Dsui_2576: Dsui_2576 - hypothetical protein, at 2,726,200 to 2,726,790
_2576
Dsui_2577: Dsui_2577 - type IV secretory pathway, VirB4 component, at 2,726,787 to 2,729,378
_2577
Dsui_2578: Dsui_2578 - hypothetical protein, at 2,729,728 to 2,730,057
_2578
Dsui_2579: Dsui_2579 - Flp pilus assembly protein, ATPase CpaF, at 2,730,072 to 2,731,124
_2579
Position (kb)
2726
2727
2728
2729
2730 Strain fitness (log2 ratio)
-2
-1
0
1 at 2725.805 kb on - strand, within Dsui_2575 at 2725.825 kb on + strand, within Dsui_2575 at 2725.869 kb on + strand, within Dsui_2575 at 2725.875 kb on - strand, within Dsui_2575 at 2725.905 kb on - strand, within Dsui_2575 at 2725.922 kb on - strand, within Dsui_2575 at 2726.195 kb on + strand at 2726.201 kb on + strand at 2726.254 kb on - strand at 2726.319 kb on - strand, within Dsui_2576 at 2726.390 kb on + strand at 2726.415 kb on - strand, within Dsui_2576 at 2726.416 kb on - strand, within Dsui_2576 at 2726.416 kb on - strand, within Dsui_2576 at 2726.439 kb on - strand, within Dsui_2576 at 2726.460 kb on + strand, within Dsui_2576 at 2726.598 kb on + strand, within Dsui_2576 at 2726.611 kb on - strand, within Dsui_2576 at 2726.658 kb on - strand, within Dsui_2576 at 2726.693 kb on - strand, within Dsui_2576 at 2726.700 kb on + strand, within Dsui_2576 at 2726.722 kb on + strand, within Dsui_2576 at 2726.883 kb on + strand at 2726.900 kb on + strand at 2726.986 kb on + strand at 2727.054 kb on - strand, within Dsui_2577 at 2727.054 kb on - strand, within Dsui_2577 at 2727.178 kb on + strand, within Dsui_2577 at 2727.208 kb on - strand, within Dsui_2577 at 2727.272 kb on - strand, within Dsui_2577 at 2727.472 kb on + strand, within Dsui_2577 at 2727.502 kb on + strand, within Dsui_2577 at 2727.556 kb on + strand, within Dsui_2577 at 2727.564 kb on - strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.587 kb on + strand, within Dsui_2577 at 2727.595 kb on - strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.674 kb on + strand, within Dsui_2577 at 2727.679 kb on + strand, within Dsui_2577 at 2727.708 kb on + strand, within Dsui_2577 at 2727.827 kb on - strand, within Dsui_2577 at 2727.867 kb on + strand, within Dsui_2577 at 2727.875 kb on - strand at 2727.890 kb on - strand, within Dsui_2577 at 2727.909 kb on + strand, within Dsui_2577 at 2727.924 kb on - strand, within Dsui_2577 at 2727.939 kb on - strand, within Dsui_2577 at 2727.987 kb on + strand, within Dsui_2577 at 2727.988 kb on - strand, within Dsui_2577 at 2727.995 kb on - strand, within Dsui_2577 at 2728.003 kb on + strand, within Dsui_2577 at 2728.169 kb on + strand, within Dsui_2577 at 2728.169 kb on + strand, within Dsui_2577 at 2728.295 kb on + strand, within Dsui_2577 at 2728.298 kb on + strand, within Dsui_2577 at 2728.393 kb on + strand, within Dsui_2577 at 2728.430 kb on - strand, within Dsui_2577 at 2728.487 kb on + strand, within Dsui_2577 at 2728.495 kb on - strand, within Dsui_2577 at 2728.509 kb on - strand, within Dsui_2577 at 2728.597 kb on + strand, within Dsui_2577 at 2728.618 kb on - strand, within Dsui_2577 at 2728.647 kb on + strand, within Dsui_2577 at 2728.694 kb on + strand, within Dsui_2577 at 2728.898 kb on - strand at 2728.909 kb on + strand, within Dsui_2577 at 2728.944 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.963 kb on + strand, within Dsui_2577 at 2728.966 kb on - strand, within Dsui_2577 at 2729.093 kb on + strand, within Dsui_2577 at 2729.219 kb on + strand at 2729.317 kb on - strand at 2729.349 kb on + strand at 2729.408 kb on + strand at 2729.538 kb on + strand at 2729.546 kb on - strand at 2729.553 kb on - strand at 2729.556 kb on - strand at 2729.614 kb on + strand at 2729.651 kb on - strand at 2729.697 kb on + strand at 2729.735 kb on + strand at 2729.735 kb on + strand at 2729.743 kb on - strand at 2729.819 kb on + strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.827 kb on - strand, within Dsui_2578 at 2729.894 kb on + strand, within Dsui_2578 at 2730.146 kb on + strand at 2730.170 kb on - strand at 2730.172 kb on - strand at 2730.256 kb on + strand, within Dsui_2579 at 2730.299 kb on - strand, within Dsui_2579
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 2,725,805 - Dsui_2575 0.50 +0.7 2,725,825 + Dsui_2575 0.53 +0.2 2,725,869 + Dsui_2575 0.59 -0.1 2,725,875 - Dsui_2575 0.60 +0.2 2,725,905 - Dsui_2575 0.63 -0.6 2,725,922 - Dsui_2575 0.66 -1.0 2,726,195 + -1.0 2,726,201 + +0.1 2,726,254 - -0.8 2,726,319 - Dsui_2576 0.20 -0.6 2,726,390 + -0.1 2,726,415 - Dsui_2576 0.36 -0.9 2,726,416 - Dsui_2576 0.37 -1.5 2,726,416 - Dsui_2576 0.37 -0.3 2,726,439 - Dsui_2576 0.40 -0.2 2,726,460 + Dsui_2576 0.44 -0.1 2,726,598 + Dsui_2576 0.67 +1.4 2,726,611 - Dsui_2576 0.70 -0.6 2,726,658 - Dsui_2576 0.77 -0.1 2,726,693 - Dsui_2576 0.83 -0.1 2,726,700 + Dsui_2576 0.85 -1.5 2,726,722 + Dsui_2576 0.88 -0.8 2,726,883 + -1.7 2,726,900 + +0.1 2,726,986 + +0.8 2,727,054 - Dsui_2577 0.10 +0.2 2,727,054 - Dsui_2577 0.10 -1.7 2,727,178 + Dsui_2577 0.15 -1.4 2,727,208 - Dsui_2577 0.16 -1.1 2,727,272 - Dsui_2577 0.19 -0.1 2,727,472 + Dsui_2577 0.26 +0.6 2,727,502 + Dsui_2577 0.28 -0.4 2,727,556 + Dsui_2577 0.30 -0.9 2,727,564 - Dsui_2577 0.30 +0.5 2,727,587 + Dsui_2577 0.31 +0.2 2,727,587 + Dsui_2577 0.31 +0.6 2,727,587 + Dsui_2577 0.31 -0.8 2,727,587 + Dsui_2577 0.31 -0.8 2,727,595 - Dsui_2577 0.31 -0.6 2,727,674 + Dsui_2577 0.34 -0.7 2,727,674 + Dsui_2577 0.34 -0.7 2,727,674 + Dsui_2577 0.34 +1.1 2,727,679 + Dsui_2577 0.34 -0.4 2,727,708 + Dsui_2577 0.36 -0.6 2,727,827 - Dsui_2577 0.40 -0.9 2,727,867 + Dsui_2577 0.42 +0.4 2,727,875 - +1.0 2,727,890 - Dsui_2577 0.43 -0.6 2,727,909 + Dsui_2577 0.43 -2.5 2,727,924 - Dsui_2577 0.44 -0.1 2,727,939 - Dsui_2577 0.44 -0.6 2,727,987 + Dsui_2577 0.46 -0.3 2,727,988 - Dsui_2577 0.46 -0.9 2,727,995 - Dsui_2577 0.47 -0.1 2,728,003 + Dsui_2577 0.47 -0.3 2,728,169 + Dsui_2577 0.53 -0.9 2,728,169 + Dsui_2577 0.53 -0.5 2,728,295 + Dsui_2577 0.58 -0.9 2,728,298 + Dsui_2577 0.58 -0.5 2,728,393 + Dsui_2577 0.62 -1.8 2,728,430 - Dsui_2577 0.63 -0.1 2,728,487 + Dsui_2577 0.66 -1.0 2,728,495 - Dsui_2577 0.66 +1.2 2,728,509 - Dsui_2577 0.66 -1.2 2,728,597 + Dsui_2577 0.70 -0.5 2,728,618 - Dsui_2577 0.71 -1.0 2,728,647 + Dsui_2577 0.72 -2.6 2,728,694 + Dsui_2577 0.74 -1.6 2,728,898 - -0.8 2,728,909 + Dsui_2577 0.82 +1.6 2,728,944 + Dsui_2577 0.83 +1.5 2,728,963 + Dsui_2577 0.84 -0.3 2,728,963 + Dsui_2577 0.84 -1.5 2,728,963 + Dsui_2577 0.84 -0.1 2,728,966 - Dsui_2577 0.84 -1.0 2,729,093 + Dsui_2577 0.89 -1.6 2,729,219 + -0.0 2,729,317 - -0.1 2,729,349 + -0.2 2,729,408 + -0.3 2,729,538 + -0.5 2,729,546 - -0.3 2,729,553 - +0.0 2,729,556 - -1.1 2,729,614 + +0.7 2,729,651 - -0.8 2,729,697 + +1.2 2,729,735 + +0.5 2,729,735 + -0.2 2,729,743 - -0.7 2,729,819 + Dsui_2578 0.28 -0.0 2,729,827 - Dsui_2578 0.30 -0.3 2,729,827 - Dsui_2578 0.30 +0.8 2,729,827 - Dsui_2578 0.30 -0.3 2,729,894 + Dsui_2578 0.50 +0.7 2,730,146 + -0.0 2,730,170 - +0.4 2,730,172 - -0.2 2,730,256 + Dsui_2579 0.17 -0.2 2,730,299 - Dsui_2579 0.22 -0.7
Or see this region's nucleotide sequence