Strain Fitness in Dechlorosoma suillum PS around Dsui_2538

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2537 and Dsui_2538 are separated by 108 nucleotidesDsui_2538 and Dsui_2539 are separated by 153 nucleotidesDsui_2539 and Dsui_2540 are separated by 24 nucleotides Dsui_2537: Dsui_2537 - poly(R)-hydroxyalkanoic acid synthase, class I, at 2,688,226 to 2,689,965 _2537 Dsui_2538: Dsui_2538 - acetoacetyl-CoA reductase, at 2,690,074 to 2,690,814 _2538 Dsui_2539: Dsui_2539 - polyhydroxyalkanoate synthesis repressor PhaR, at 2,690,968 to 2,691,531 _2539 Dsui_2540: Dsui_2540 - ribosomal protein S12 methylthiotransferase RimO, at 2,691,556 to 2,692,899 _2540 Position (kb) 2690 2691Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2690.063 kb on - strandat 2690.134 kb on + strandat 2690.139 kb on + strandat 2690.281 kb on + strand, within Dsui_2538at 2690.288 kb on - strand, within Dsui_2538at 2690.288 kb on - strandat 2690.373 kb on + strand, within Dsui_2538at 2690.380 kb on + strand, within Dsui_2538at 2690.388 kb on - strand, within Dsui_2538at 2690.388 kb on - strand, within Dsui_2538at 2690.397 kb on + strand, within Dsui_2538at 2690.508 kb on + strand, within Dsui_2538at 2690.576 kb on - strandat 2690.640 kb on + strand, within Dsui_2538at 2690.667 kb on + strand, within Dsui_2538at 2690.675 kb on - strand, within Dsui_2538at 2690.711 kb on + strand, within Dsui_2538at 2690.737 kb on + strand, within Dsui_2538at 2690.742 kb on - strandat 2690.747 kb on + strandat 2690.747 kb on + strandat 2690.811 kb on - strandat 2690.821 kb on + strandat 2690.964 kb on + strandat 2690.994 kb on + strandat 2691.046 kb on - strand, within Dsui_2539at 2691.280 kb on + strand, within Dsui_2539at 2691.344 kb on + strand, within Dsui_2539at 2691.462 kb on - strand, within Dsui_2539at 2691.550 kb on + strandat 2691.579 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,690,063 - +0.6
2,690,134 + +0.5
2,690,139 + +0.5
2,690,281 + Dsui_2538 0.28 -0.4
2,690,288 - Dsui_2538 0.29 +0.1
2,690,288 - +0.2
2,690,373 + Dsui_2538 0.40 +0.3
2,690,380 + Dsui_2538 0.41 +0.0
2,690,388 - Dsui_2538 0.42 +0.0
2,690,388 - Dsui_2538 0.42 +0.6
2,690,397 + Dsui_2538 0.44 -0.2
2,690,508 + Dsui_2538 0.59 +0.8
2,690,576 - +3.2
2,690,640 + Dsui_2538 0.76 +0.4
2,690,667 + Dsui_2538 0.80 +0.2
2,690,675 - Dsui_2538 0.81 -1.3
2,690,711 + Dsui_2538 0.86 +0.2
2,690,737 + Dsui_2538 0.89 +0.5
2,690,742 - +0.5
2,690,747 + -0.2
2,690,747 + -0.1
2,690,811 - +0.4
2,690,821 + +0.4
2,690,964 + -0.7
2,690,994 + -0.7
2,691,046 - Dsui_2539 0.14 -1.5
2,691,280 + Dsui_2539 0.55 -0.6
2,691,344 + Dsui_2539 0.67 -1.3
2,691,462 - Dsui_2539 0.88 -2.2
2,691,550 + -0.3
2,691,579 + -0.5

Or see this region's nucleotide sequence