Strain Fitness in Dechlorosoma suillum PS around Dsui_2479

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2475 and Dsui_2476 are separated by 138 nucleotidesDsui_2476 and Dsui_2477 are separated by 70 nucleotidesDsui_2477 and Dsui_2478 are separated by 17 nucleotidesDsui_2478 and Dsui_2479 overlap by 4 nucleotidesDsui_2479 and Dsui_2480 are separated by 6 nucleotides Dsui_2475: Dsui_2475 - tRNA-Gly, at 2,629,209 to 2,629,284 _2475 Dsui_2476: Dsui_2476 - hypothetical protein, at 2,629,423 to 2,629,626 _2476 Dsui_2477: Dsui_2477 - tRNA-Leu, at 2,629,697 to 2,629,781 _2477 Dsui_2478: Dsui_2478 - hypothetical protein, at 2,629,799 to 2,630,239 _2478 Dsui_2479: Dsui_2479 - hypothetical protein, at 2,630,236 to 2,630,511 _2479 Dsui_2480: Dsui_2480 - nitrous oxidase accessory protein, at 2,630,518 to 2,631,753 _2480 Position (kb) 2630 2631Strain fitness (log2 ratio) -1 0 1at 2629.328 kb on + strandat 2629.394 kb on - strandat 2629.490 kb on + strand, within Dsui_2476at 2629.653 kb on + strandat 2629.779 kb on + strandat 2629.814 kb on - strandat 2629.818 kb on + strandat 2629.852 kb on - strand, within Dsui_2478at 2629.888 kb on - strand, within Dsui_2478at 2629.902 kb on - strand, within Dsui_2478at 2629.907 kb on - strand, within Dsui_2478at 2629.944 kb on + strand, within Dsui_2478at 2629.955 kb on + strand, within Dsui_2478at 2630.021 kb on - strand, within Dsui_2478at 2630.228 kb on + strandat 2630.253 kb on + strandat 2630.267 kb on - strandat 2630.293 kb on + strand, within Dsui_2479at 2630.431 kb on - strand, within Dsui_2479at 2630.446 kb on - strand, within Dsui_2479at 2630.481 kb on + strand, within Dsui_2479at 2630.505 kb on + strandat 2630.505 kb on + strandat 2630.513 kb on - strandat 2630.573 kb on - strandat 2630.665 kb on - strand, within Dsui_2480at 2630.702 kb on + strand, within Dsui_2480at 2630.746 kb on + strand, within Dsui_2480at 2630.749 kb on - strand, within Dsui_2480at 2630.792 kb on + strand, within Dsui_2480at 2630.799 kb on - strand, within Dsui_2480at 2630.884 kb on + strandat 2631.108 kb on - strand, within Dsui_2480at 2631.293 kb on - strand, within Dsui_2480at 2631.381 kb on + strandat 2631.415 kb on + strand, within Dsui_2480at 2631.428 kb on - strand, within Dsui_2480at 2631.493 kb on - strand, within Dsui_2480

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,629,328 + -0.4
2,629,394 - -0.0
2,629,490 + Dsui_2476 0.33 +0.0
2,629,653 + +0.7
2,629,779 + +0.1
2,629,814 - -0.7
2,629,818 + +0.4
2,629,852 - Dsui_2478 0.12 +0.6
2,629,888 - Dsui_2478 0.20 -0.4
2,629,902 - Dsui_2478 0.23 +0.0
2,629,907 - Dsui_2478 0.24 -0.0
2,629,944 + Dsui_2478 0.33 +0.6
2,629,955 + Dsui_2478 0.35 -0.9
2,630,021 - Dsui_2478 0.50 -0.4
2,630,228 + +0.2
2,630,253 + +0.3
2,630,267 - +1.6
2,630,293 + Dsui_2479 0.21 +0.6
2,630,431 - Dsui_2479 0.71 -0.0
2,630,446 - Dsui_2479 0.76 +0.2
2,630,481 + Dsui_2479 0.89 +0.4
2,630,505 + +0.9
2,630,505 + +0.6
2,630,513 - +0.6
2,630,573 - +0.2
2,630,665 - Dsui_2480 0.12 -0.2
2,630,702 + Dsui_2480 0.15 +0.5
2,630,746 + Dsui_2480 0.18 +0.4
2,630,749 - Dsui_2480 0.19 +0.4
2,630,792 + Dsui_2480 0.22 -0.5
2,630,799 - Dsui_2480 0.23 +0.5
2,630,884 + +1.2
2,631,108 - Dsui_2480 0.48 -1.3
2,631,293 - Dsui_2480 0.63 +0.5
2,631,381 + +0.8
2,631,415 + Dsui_2480 0.73 -0.5
2,631,428 - Dsui_2480 0.74 +0.1
2,631,493 - Dsui_2480 0.79 -1.2

Or see this region's nucleotide sequence