Strain Fitness in Dechlorosoma suillum PS around Dsui_2143

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2142 and Dsui_2143 are separated by 202 nucleotidesDsui_2143 and Dsui_2144 are separated by 276 nucleotidesDsui_2144 and Dsui_2145 are separated by 213 nucleotides Dsui_2142: Dsui_2142 - Protein of unknown function (DUF2894), at 2,271,236 to 2,272,111 _2142 Dsui_2143: Dsui_2143 - hypothetical protein, at 2,272,314 to 2,272,856 _2143 Dsui_2144: Dsui_2144 - tRNA-Ser, at 2,273,133 to 2,273,220 _2144 Dsui_2145: Dsui_2145 - FtsH-interacting integral membrane protein, at 2,273,434 to 2,274,126 _2145 Position (kb) 2272 2273Strain fitness (log2 ratio) -1 0 1 2at 2271.866 kb on + strand, within Dsui_2142at 2271.877 kb on + strand, within Dsui_2142at 2271.885 kb on - strandat 2272.006 kb on + strandat 2272.019 kb on - strandat 2272.019 kb on - strandat 2272.038 kb on - strandat 2272.184 kb on - strandat 2272.263 kb on + strandat 2272.265 kb on - strandat 2272.270 kb on + strandat 2272.278 kb on - strandat 2272.442 kb on - strandat 2272.467 kb on + strand, within Dsui_2143at 2272.472 kb on + strand, within Dsui_2143at 2272.475 kb on - strandat 2272.520 kb on + strand, within Dsui_2143at 2272.679 kb on - strandat 2272.738 kb on + strand, within Dsui_2143at 2272.757 kb on - strandat 2272.872 kb on + strandat 2272.872 kb on + strandat 2272.874 kb on + strandat 2272.911 kb on + strandat 2273.274 kb on + strandat 2273.333 kb on + strandat 2273.343 kb on + strandat 2273.343 kb on + strandat 2273.351 kb on - strandat 2273.388 kb on + strandat 2273.502 kb on + strandat 2273.751 kb on + strand, within Dsui_2145

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,271,866 + Dsui_2142 0.72 +1.6
2,271,877 + Dsui_2142 0.73 +0.5
2,271,885 - +0.6
2,272,006 + +1.6
2,272,019 - +1.1
2,272,019 - +2.7
2,272,038 - -0.2
2,272,184 - +0.6
2,272,263 + -0.7
2,272,265 - +0.1
2,272,270 + +0.4
2,272,278 - +1.4
2,272,442 - +2.1
2,272,467 + Dsui_2143 0.28 -1.4
2,272,472 + Dsui_2143 0.29 -0.3
2,272,475 - +0.1
2,272,520 + Dsui_2143 0.38 -1.2
2,272,679 - +2.1
2,272,738 + Dsui_2143 0.78 -0.5
2,272,757 - +1.1
2,272,872 + +0.5
2,272,872 + -0.0
2,272,874 + -0.2
2,272,911 + +2.1
2,273,274 + +0.7
2,273,333 + +0.3
2,273,343 + -0.5
2,273,343 + -0.5
2,273,351 - +2.1
2,273,388 + +0.2
2,273,502 + +0.5
2,273,751 + Dsui_2145 0.46 +0.3

Or see this region's nucleotide sequence