Strain Fitness in Dechlorosoma suillum PS around Dsui_2117

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2116 and Dsui_2117 are separated by 160 nucleotidesDsui_2117 and Dsui_2118 are separated by 97 nucleotides Dsui_2116: Dsui_2116 - Fe-dependent oxidoreductase, alcohol dehydrogenase, at 2,241,610 to 2,242,758 _2116 Dsui_2117: Dsui_2117 - acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit, at 2,242,919 to 2,243,785 _2117 Dsui_2118: Dsui_2118 - acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit, at 2,243,883 to 2,244,890 _2118 Position (kb) 2242 2243 2244Strain fitness (log2 ratio) -1 0 1 2 3at 2242.053 kb on + strandat 2242.133 kb on - strand, within Dsui_2116at 2242.330 kb on + strand, within Dsui_2116at 2242.377 kb on + strand, within Dsui_2116at 2242.406 kb on + strandat 2242.532 kb on - strandat 2242.580 kb on - strandat 2242.656 kb on + strandat 2242.668 kb on + strandat 2242.705 kb on + strandat 2242.705 kb on + strandat 2242.758 kb on + strandat 2242.761 kb on - strandat 2242.771 kb on + strandat 2242.781 kb on + strandat 2242.813 kb on - strandat 2242.895 kb on + strandat 2242.973 kb on - strandat 2243.024 kb on - strandat 2243.024 kb on - strand, within Dsui_2117at 2243.076 kb on - strandat 2243.076 kb on - strand, within Dsui_2117at 2243.270 kb on - strand, within Dsui_2117at 2243.331 kb on + strandat 2243.337 kb on - strandat 2243.396 kb on - strandat 2243.396 kb on - strand, within Dsui_2117at 2243.537 kb on - strandat 2243.712 kb on + strandat 2243.875 kb on - strandat 2243.929 kb on + strandat 2243.937 kb on - strandat 2244.115 kb on + strandat 2244.278 kb on - strandat 2244.310 kb on - strandat 2244.385 kb on + strandat 2244.583 kb on - strand, within Dsui_2118at 2244.616 kb on + strandat 2244.673 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,242,053 + +0.6
2,242,133 - Dsui_2116 0.46 +0.0
2,242,330 + Dsui_2116 0.63 +1.5
2,242,377 + Dsui_2116 0.67 -1.6
2,242,406 + +1.1
2,242,532 - +1.1
2,242,580 - +0.6
2,242,656 + +0.6
2,242,668 + +0.3
2,242,705 + +0.1
2,242,705 + +0.1
2,242,758 + -0.9
2,242,761 - +1.1
2,242,771 + -0.0
2,242,781 + +0.1
2,242,813 - +0.1
2,242,895 + +0.1
2,242,973 - +0.9
2,243,024 - +0.6
2,243,024 - Dsui_2117 0.12 -1.7
2,243,076 - +0.6
2,243,076 - Dsui_2117 0.18 +0.6
2,243,270 - Dsui_2117 0.40 -0.1
2,243,331 + +3.1
2,243,337 - +2.1
2,243,396 - +1.1
2,243,396 - Dsui_2117 0.55 -0.4
2,243,537 - +0.3
2,243,712 + +1.1
2,243,875 - -0.2
2,243,929 + +2.1
2,243,937 - -0.7
2,244,115 + +1.1
2,244,278 - +0.1
2,244,310 - +0.8
2,244,385 + -0.2
2,244,583 - Dsui_2118 0.69 +0.6
2,244,616 + +0.6
2,244,673 + +3.1

Or see this region's nucleotide sequence