Strain Fitness in Dechlorosoma suillum PS around Dsui_1924

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1923 and Dsui_1924 overlap by 4 nucleotidesDsui_1924 and Dsui_1925 are separated by 984 nucleotides Dsui_1923: Dsui_1923 - ribonucleotide reductase, beta subunit, at 2,030,016 to 2,031,200 _1923 Dsui_1924: Dsui_1924 - ribonucleoside-diphosphate reductase, alpha subunit, at 2,031,197 to 2,034,043 _1924 Dsui_1925: Dsui_1925 - acetolactate synthase, large subunit, biosynthetic type, at 2,035,028 to 2,036,746 _1925 Position (kb) 2031 2032 2033 2034 2035Strain fitness (log2 ratio) -1 0 1 2at 2030.274 kb on - strand, within Dsui_1923at 2030.287 kb on + strand, within Dsui_1923at 2030.287 kb on + strand, within Dsui_1923at 2030.311 kb on - strand, within Dsui_1923at 2030.359 kb on + strandat 2030.364 kb on + strand, within Dsui_1923at 2030.364 kb on + strandat 2030.372 kb on - strand, within Dsui_1923at 2030.372 kb on - strand, within Dsui_1923at 2030.435 kb on + strand, within Dsui_1923at 2030.496 kb on - strand, within Dsui_1923at 2030.588 kb on - strand, within Dsui_1923at 2030.623 kb on - strand, within Dsui_1923at 2030.656 kb on - strand, within Dsui_1923at 2030.704 kb on - strand, within Dsui_1923at 2030.802 kb on - strand, within Dsui_1923at 2030.935 kb on + strandat 2030.943 kb on - strand, within Dsui_1923at 2030.987 kb on - strand, within Dsui_1923at 2031.022 kb on - strand, within Dsui_1923at 2031.322 kb on + strandat 2031.330 kb on - strandat 2031.333 kb on + strandat 2031.426 kb on - strandat 2031.475 kb on - strandat 2031.521 kb on - strand, within Dsui_1924at 2031.586 kb on + strand, within Dsui_1924at 2031.586 kb on + strand, within Dsui_1924at 2031.587 kb on - strand, within Dsui_1924at 2031.594 kb on - strand, within Dsui_1924at 2031.594 kb on - strand, within Dsui_1924at 2031.628 kb on - strand, within Dsui_1924at 2031.802 kb on - strand, within Dsui_1924at 2031.858 kb on + strand, within Dsui_1924at 2032.021 kb on - strand, within Dsui_1924at 2032.096 kb on + strandat 2032.104 kb on - strand, within Dsui_1924at 2032.104 kb on - strand, within Dsui_1924at 2032.141 kb on - strand, within Dsui_1924at 2032.207 kb on - strand, within Dsui_1924at 2032.294 kb on + strand, within Dsui_1924at 2032.294 kb on + strand, within Dsui_1924at 2032.294 kb on + strand, within Dsui_1924at 2032.295 kb on - strand, within Dsui_1924at 2032.302 kb on - strand, within Dsui_1924at 2032.302 kb on - strand, within Dsui_1924at 2032.302 kb on - strand, within Dsui_1924at 2032.302 kb on - strand, within Dsui_1924at 2032.302 kb on - strand, within Dsui_1924at 2032.304 kb on + strand, within Dsui_1924at 2032.352 kb on + strandat 2032.524 kb on - strand, within Dsui_1924at 2032.670 kb on - strand, within Dsui_1924at 2032.707 kb on + strandat 2032.734 kb on - strand, within Dsui_1924at 2033.065 kb on - strand, within Dsui_1924at 2033.096 kb on - strand, within Dsui_1924at 2033.264 kb on + strandat 2033.324 kb on + strandat 2033.354 kb on - strand, within Dsui_1924at 2033.438 kb on + strandat 2033.463 kb on - strand, within Dsui_1924at 2033.468 kb on - strand, within Dsui_1924at 2033.593 kb on - strand, within Dsui_1924at 2033.669 kb on + strandat 2033.671 kb on - strand, within Dsui_1924at 2033.672 kb on - strand, within Dsui_1924at 2033.689 kb on + strand, within Dsui_1924at 2033.727 kb on - strand, within Dsui_1924at 2033.862 kb on + strandat 2033.870 kb on - strandat 2033.945 kb on - strandat 2034.288 kb on - strandat 2034.299 kb on + strandat 2034.299 kb on + strandat 2034.299 kb on + strandat 2034.302 kb on - strandat 2034.307 kb on - strandat 2034.418 kb on + strandat 2034.442 kb on + strandat 2034.457 kb on - strandat 2034.465 kb on - strandat 2034.562 kb on + strandat 2034.599 kb on + strandat 2034.617 kb on + strandat 2034.691 kb on + strandat 2034.699 kb on - strandat 2034.790 kb on - strandat 2034.811 kb on - strandat 2034.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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2,030,274 - Dsui_1923 0.22 +0.7
2,030,287 + Dsui_1923 0.23 +2.0
2,030,287 + Dsui_1923 0.23 +1.5
2,030,311 - Dsui_1923 0.25 +0.4
2,030,359 + +0.1
2,030,364 + Dsui_1923 0.29 -0.1
2,030,364 + +0.8
2,030,372 - Dsui_1923 0.30 +0.1
2,030,372 - Dsui_1923 0.30 +0.4
2,030,435 + Dsui_1923 0.35 +0.2
2,030,496 - Dsui_1923 0.41 +0.3
2,030,588 - Dsui_1923 0.48 +0.5
2,030,623 - Dsui_1923 0.51 -0.4
2,030,656 - Dsui_1923 0.54 +0.2
2,030,704 - Dsui_1923 0.58 -0.2
2,030,802 - Dsui_1923 0.66 +0.6
2,030,935 + +1.1
2,030,943 - Dsui_1923 0.78 +0.5
2,030,987 - Dsui_1923 0.82 -0.1
2,031,022 - Dsui_1923 0.85 -0.1
2,031,322 + +0.4
2,031,330 - +1.4
2,031,333 + +0.4
2,031,426 - -0.1
2,031,475 - -0.9
2,031,521 - Dsui_1924 0.11 -0.2
2,031,586 + Dsui_1924 0.14 +0.7
2,031,586 + Dsui_1924 0.14 +0.1
2,031,587 - Dsui_1924 0.14 +0.7
2,031,594 - Dsui_1924 0.14 +1.8
2,031,594 - Dsui_1924 0.14 +1.4
2,031,628 - Dsui_1924 0.15 -0.3
2,031,802 - Dsui_1924 0.21 -0.8
2,031,858 + Dsui_1924 0.23 +0.3
2,032,021 - Dsui_1924 0.29 +1.3
2,032,096 + +0.5
2,032,104 - Dsui_1924 0.32 +0.2
2,032,104 - Dsui_1924 0.32 +0.3
2,032,141 - Dsui_1924 0.33 +0.4
2,032,207 - Dsui_1924 0.35 +0.1
2,032,294 + Dsui_1924 0.39 +0.5
2,032,294 + Dsui_1924 0.39 +0.3
2,032,294 + Dsui_1924 0.39 +1.5
2,032,295 - Dsui_1924 0.39 +0.0
2,032,302 - Dsui_1924 0.39 +0.3
2,032,302 - Dsui_1924 0.39 +0.4
2,032,302 - Dsui_1924 0.39 +0.3
2,032,302 - Dsui_1924 0.39 -0.0
2,032,302 - Dsui_1924 0.39 +0.3
2,032,304 + Dsui_1924 0.39 -0.5
2,032,352 + -0.2
2,032,524 - Dsui_1924 0.47 +0.3
2,032,670 - Dsui_1924 0.52 +1.8
2,032,707 + +1.1
2,032,734 - Dsui_1924 0.54 +1.1
2,033,065 - Dsui_1924 0.66 -0.3
2,033,096 - Dsui_1924 0.67 +0.1
2,033,264 + +1.5
2,033,324 + +2.1
2,033,354 - Dsui_1924 0.76 +0.3
2,033,438 + +0.1
2,033,463 - Dsui_1924 0.80 -0.2
2,033,468 - Dsui_1924 0.80 -0.0
2,033,593 - Dsui_1924 0.84 +0.0
2,033,669 + +1.1
2,033,671 - Dsui_1924 0.87 +0.1
2,033,672 - Dsui_1924 0.87 +0.0
2,033,689 + Dsui_1924 0.88 +0.8
2,033,727 - Dsui_1924 0.89 +0.5
2,033,862 + +0.2
2,033,870 - +0.2
2,033,945 - +0.3
2,034,288 - -0.5
2,034,299 + +0.3
2,034,299 + +1.8
2,034,299 + +1.1
2,034,302 - +0.4
2,034,307 - -0.7
2,034,418 + -0.7
2,034,442 + +0.1
2,034,457 - -0.7
2,034,465 - +1.1
2,034,562 + +1.1
2,034,599 + -0.5
2,034,617 + -0.9
2,034,691 + +0.4
2,034,699 - -0.9
2,034,790 - +2.1
2,034,811 - +2.1
2,034,890 + -1.6

Or see this region's nucleotide sequence