Strain Fitness in Dechlorosoma suillum PS around Dsui_1451

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1449 and Dsui_1450 are separated by 16 nucleotidesDsui_1450 and Dsui_1451 are separated by 22 nucleotidesDsui_1451 and Dsui_1452 are separated by 43 nucleotides Dsui_1449: Dsui_1449 - protein kinase family protein, at 1,504,482 to 1,506,998 _1449 Dsui_1450: Dsui_1450 - serine/threonine protein phosphatase, at 1,507,015 to 1,507,842 _1450 Dsui_1451: Dsui_1451 - FHA domain-containing protein, at 1,507,865 to 1,508,593 _1451 Dsui_1452: Dsui_1452 - putative transmembrane sensor domain protein, at 1,508,637 to 1,510,850 _1452 Position (kb) 1507 1508 1509Strain fitness (log2 ratio) -2 -1 0 1at 1506.904 kb on - strandat 1506.904 kb on - strandat 1507.025 kb on + strandat 1507.547 kb on + strand, within Dsui_1450at 1507.631 kb on + strand, within Dsui_1450at 1507.855 kb on + strandat 1507.863 kb on - strandat 1507.969 kb on - strand, within Dsui_1451at 1508.005 kb on + strand, within Dsui_1451at 1508.036 kb on + strand, within Dsui_1451at 1508.036 kb on + strand, within Dsui_1451at 1508.041 kb on + strand, within Dsui_1451at 1508.058 kb on - strandat 1508.410 kb on - strand, within Dsui_1451at 1508.587 kb on + strandat 1508.682 kb on - strandat 1508.689 kb on + strandat 1508.697 kb on - strandat 1509.164 kb on - strand, within Dsui_1452at 1509.493 kb on + strand, within Dsui_1452

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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1,506,904 - -0.1
1,506,904 - -2.0
1,507,025 + -1.2
1,507,547 + Dsui_1450 0.64 +1.4
1,507,631 + Dsui_1450 0.74 +1.4
1,507,855 + -0.0
1,507,863 - +1.0
1,507,969 - Dsui_1451 0.14 -1.1
1,508,005 + Dsui_1451 0.19 -0.6
1,508,036 + Dsui_1451 0.23 -2.0
1,508,036 + Dsui_1451 0.23 +1.3
1,508,041 + Dsui_1451 0.24 +1.4
1,508,058 - -0.8
1,508,410 - Dsui_1451 0.75 +0.1
1,508,587 + -0.2
1,508,682 - -0.0
1,508,689 + -1.2
1,508,697 - +0.4
1,509,164 - Dsui_1452 0.24 +1.3
1,509,493 + Dsui_1452 0.39 +0.4

Or see this region's nucleotide sequence