Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0867 and Dsui_0868 overlap by 8 nucleotides Dsui_0868 and Dsui_0869 are separated by 3 nucleotides Dsui_0869 and Dsui_0870 overlap by 4 nucleotides Dsui_0870 and Dsui_0871 are separated by 111 nucleotides Dsui_0871 and Dsui_0872 are separated by 137 nucleotides
Dsui_0867: Dsui_0867 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 883,275 to 884,651
_0867
Dsui_0868: Dsui_0868 - hypothetical protein, at 884,644 to 884,985
_0868
Dsui_0869: Dsui_0869 - hypothetical protein, at 884,989 to 885,297
_0869
Dsui_0870: Dsui_0870 - putative membrane protein, at 885,294 to 885,701
_0870
Dsui_0871: Dsui_0871 - hypothetical protein, at 885,813 to 886,133
_0871
Dsui_0872: Dsui_0872 - exodeoxyribonuclease III, at 886,271 to 887,056
_0872
Position (kb) 884
885
886 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 884.013 kb on + strand, within Dsui_0867 at 884.035 kb on - strand, within Dsui_0867 at 884.066 kb on - strand, within Dsui_0867 at 884.100 kb on - strand, within Dsui_0867 at 884.100 kb on - strand, within Dsui_0867 at 884.101 kb on - strand, within Dsui_0867 at 884.153 kb on + strand, within Dsui_0867 at 884.162 kb on - strand at 884.260 kb on + strand, within Dsui_0867 at 884.317 kb on + strand, within Dsui_0867 at 884.317 kb on + strand, within Dsui_0867 at 884.394 kb on + strand, within Dsui_0867 at 884.394 kb on + strand, within Dsui_0867 at 884.401 kb on - strand, within Dsui_0867 at 884.479 kb on + strand, within Dsui_0867 at 884.571 kb on - strand at 884.640 kb on + strand at 884.709 kb on + strand, within Dsui_0868 at 884.709 kb on + strand, within Dsui_0868 at 884.714 kb on + strand, within Dsui_0868 at 884.717 kb on - strand, within Dsui_0868 at 884.731 kb on + strand, within Dsui_0868 at 884.752 kb on - strand, within Dsui_0868 at 884.780 kb on + strand, within Dsui_0868 at 884.804 kb on - strand, within Dsui_0868 at 884.872 kb on + strand, within Dsui_0868 at 884.900 kb on + strand, within Dsui_0868 at 884.937 kb on + strand, within Dsui_0868 at 884.995 kb on - strand at 884.995 kb on - strand at 885.144 kb on + strand, within Dsui_0869 at 885.154 kb on + strand, within Dsui_0869 at 885.157 kb on - strand, within Dsui_0869 at 885.191 kb on - strand, within Dsui_0869 at 885.211 kb on + strand, within Dsui_0869 at 885.327 kb on - strand at 885.341 kb on + strand, within Dsui_0870 at 885.355 kb on + strand, within Dsui_0870 at 885.436 kb on - strand, within Dsui_0870 at 885.445 kb on + strand, within Dsui_0870 at 885.521 kb on + strand, within Dsui_0870 at 885.543 kb on + strand at 885.610 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.615 kb on - strand, within Dsui_0870 at 885.627 kb on + strand, within Dsui_0870 at 885.756 kb on - strand at 885.797 kb on + strand at 885.899 kb on + strand, within Dsui_0871 at 886.104 kb on - strand at 886.123 kb on - strand at 886.179 kb on + strand at 886.186 kb on + strand at 886.187 kb on - strand at 886.187 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.192 kb on - strand at 886.276 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 884,013 + Dsui_0867 0.54 +0.2 884,035 - Dsui_0867 0.55 +0.4 884,066 - Dsui_0867 0.57 -0.0 884,100 - Dsui_0867 0.60 -1.5 884,100 - Dsui_0867 0.60 -0.7 884,101 - Dsui_0867 0.60 +0.9 884,153 + Dsui_0867 0.64 +0.0 884,162 - +3.0 884,260 + Dsui_0867 0.72 -0.5 884,317 + Dsui_0867 0.76 +0.0 884,317 + Dsui_0867 0.76 +0.3 884,394 + Dsui_0867 0.81 -0.1 884,394 + Dsui_0867 0.81 -0.2 884,401 - Dsui_0867 0.82 -2.3 884,479 + Dsui_0867 0.87 +0.1 884,571 - -0.1 884,640 + +0.6 884,709 + Dsui_0868 0.19 +0.2 884,709 + Dsui_0868 0.19 +0.4 884,714 + Dsui_0868 0.20 -0.1 884,717 - Dsui_0868 0.21 +0.1 884,731 + Dsui_0868 0.25 +0.7 884,752 - Dsui_0868 0.32 -0.2 884,780 + Dsui_0868 0.40 -0.4 884,804 - Dsui_0868 0.47 +0.8 884,872 + Dsui_0868 0.67 -0.6 884,900 + Dsui_0868 0.75 +1.0 884,937 + Dsui_0868 0.86 -1.2 884,995 - -0.6 884,995 - -0.1 885,144 + Dsui_0869 0.50 -0.7 885,154 + Dsui_0869 0.53 +0.2 885,157 - Dsui_0869 0.54 +0.3 885,191 - Dsui_0869 0.65 +0.3 885,211 + Dsui_0869 0.72 +0.5 885,327 - +0.1 885,341 + Dsui_0870 0.12 -0.7 885,355 + Dsui_0870 0.15 -0.3 885,436 - Dsui_0870 0.35 -0.3 885,445 + Dsui_0870 0.37 -0.2 885,521 + Dsui_0870 0.56 -0.4 885,543 + +0.4 885,610 - Dsui_0870 0.77 +0.2 885,615 - Dsui_0870 0.79 -0.2 885,615 - Dsui_0870 0.79 -0.5 885,627 + Dsui_0870 0.82 +0.7 885,756 - +0.6 885,797 + -0.3 885,899 + Dsui_0871 0.27 +0.1 886,104 - -0.0 886,123 - -0.5 886,179 + -0.2 886,186 + +0.2 886,187 - +0.2 886,187 - -0.5 886,192 - +0.0 886,192 - +0.0 886,192 - -0.2 886,276 - -0.1
Or see this region's nucleotide sequence