Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0548 and Dsui_0549 overlap by 1 nucleotides Dsui_0549 and Dsui_0550 are separated by 240 nucleotides
Dsui_0548: Dsui_0548 - putative transporter component, at 551,259 to 552,365
_0548
Dsui_0549: Dsui_0549 - queuosine biosynthesis protein QueC, at 552,365 to 553,054
_0549
Dsui_0550: Dsui_0550 - nitrogenase molybdenum-iron cofactor biosynthesis protein NifE, at 553,295 to 554,752
_0550
Position (kb) 552
553
554 Strain fitness (log2 ratio) -2
-1
0
1
2 at 551.391 kb on - strand, within Dsui_0548 at 551.529 kb on - strand, within Dsui_0548 at 551.585 kb on + strand at 551.616 kb on + strand, within Dsui_0548 at 551.943 kb on - strand, within Dsui_0548 at 552.007 kb on - strand, within Dsui_0548 at 552.127 kb on - strand, within Dsui_0548 at 552.191 kb on - strand, within Dsui_0548 at 552.306 kb on - strand at 552.487 kb on + strand at 552.551 kb on + strand, within Dsui_0549 at 552.559 kb on - strand, within Dsui_0549 at 552.591 kb on - strand, within Dsui_0549 at 552.619 kb on + strand at 552.702 kb on + strand at 552.705 kb on - strand, within Dsui_0549 at 552.717 kb on + strand at 552.717 kb on + strand at 552.730 kb on - strand, within Dsui_0549 at 552.745 kb on - strand, within Dsui_0549 at 552.768 kb on - strand, within Dsui_0549 at 552.808 kb on + strand, within Dsui_0549 at 552.862 kb on - strand at 552.955 kb on + strand at 553.058 kb on - strand at 553.068 kb on - strand at 553.114 kb on + strand at 553.192 kb on + strand at 553.219 kb on + strand at 553.219 kb on + strand at 553.227 kb on - strand at 553.229 kb on + strand at 553.231 kb on + strand at 553.357 kb on + strand at 553.363 kb on + strand at 553.418 kb on + strand at 553.481 kb on + strand, within Dsui_0550 at 553.595 kb on - strand, within Dsui_0550 at 553.598 kb on + strand, within Dsui_0550 at 553.606 kb on - strand, within Dsui_0550 at 553.606 kb on - strand, within Dsui_0550 at 553.711 kb on + strand, within Dsui_0550 at 553.723 kb on + strand, within Dsui_0550 at 553.731 kb on - strand, within Dsui_0550 at 553.804 kb on - strand, within Dsui_0550 at 553.810 kb on + strand, within Dsui_0550 at 553.861 kb on + strand, within Dsui_0550 at 553.878 kb on + strand, within Dsui_0550 at 553.886 kb on - strand, within Dsui_0550 at 554.048 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 551,391 - Dsui_0548 0.12 +0.9 551,529 - Dsui_0548 0.24 -1.1 551,585 + +1.9 551,616 + Dsui_0548 0.32 +0.1 551,943 - Dsui_0548 0.62 +0.0 552,007 - Dsui_0548 0.68 +0.0 552,127 - Dsui_0548 0.78 +0.3 552,191 - Dsui_0548 0.84 +0.4 552,306 - +1.1 552,487 + -0.9 552,551 + Dsui_0549 0.27 -0.5 552,559 - Dsui_0549 0.28 -0.1 552,591 - Dsui_0549 0.33 -0.4 552,619 + -0.4 552,702 + +1.9 552,705 - Dsui_0549 0.49 -0.2 552,717 + +2.5 552,717 + -0.9 552,730 - Dsui_0549 0.53 -2.1 552,745 - Dsui_0549 0.55 +0.1 552,768 - Dsui_0549 0.58 -0.6 552,808 + Dsui_0549 0.64 -1.2 552,862 - +1.9 552,955 + -0.4 553,058 - +0.1 553,068 - +1.2 553,114 + +0.4 553,192 + -0.5 553,219 + -0.1 553,219 + +0.4 553,227 - +0.4 553,229 + +0.5 553,231 + -0.6 553,357 + -0.5 553,363 + -0.4 553,418 + -0.2 553,481 + Dsui_0550 0.13 +1.8 553,595 - Dsui_0550 0.21 -1.0 553,598 + Dsui_0550 0.21 -0.9 553,606 - Dsui_0550 0.21 -1.8 553,606 - Dsui_0550 0.21 +0.0 553,711 + Dsui_0550 0.29 -0.2 553,723 + Dsui_0550 0.29 -0.5 553,731 - Dsui_0550 0.30 -1.2 553,804 - Dsui_0550 0.35 -0.2 553,810 + Dsui_0550 0.35 -1.1 553,861 + Dsui_0550 0.39 -0.2 553,878 + Dsui_0550 0.40 -0.9 553,886 - Dsui_0550 0.41 +0.4 554,048 - +0.9
Or see this region's nucleotide sequence