Experiment: defined media with 40 mM sodium acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0204 and Dsui_0205 overlap by 4 nucleotides Dsui_0205 and Dsui_0206 overlap by 4 nucleotides Dsui_0206 and Dsui_0207 overlap by 4 nucleotides Dsui_0207 and Dsui_0208 overlap by 1 nucleotides
Dsui_0204: Dsui_0204 - hypothetical protein, at 202,384 to 204,846
_0204
Dsui_0205: Dsui_0205 - Conserved hypothetical protein 2217 (DUF2460), at 204,843 to 205,451
_0205
Dsui_0206: Dsui_0206 - phage conserved hypothetical protein, at 205,448 to 206,554
_0206
Dsui_0207: Dsui_0207 - hypothetical protein, at 206,551 to 206,979
_0207
Dsui_0208: Dsui_0208 - hypothetical protein, at 206,979 to 210,539
_0208
Position (kb) 205
206
207 Strain fitness (log2 ratio) -2
-1
0
1
2 at 204.516 kb on + strand, within Dsui_0204 at 204.555 kb on + strand, within Dsui_0204 at 204.555 kb on + strand, within Dsui_0204 at 204.563 kb on - strand, within Dsui_0204 at 204.756 kb on - strand at 204.827 kb on + strand at 204.853 kb on + strand at 204.877 kb on - strand at 204.992 kb on + strand, within Dsui_0205 at 205.013 kb on - strand, within Dsui_0205 at 205.037 kb on + strand, within Dsui_0205 at 205.103 kb on + strand, within Dsui_0205 at 205.112 kb on - strand, within Dsui_0205 at 205.112 kb on - strand, within Dsui_0205 at 205.144 kb on + strand, within Dsui_0205 at 205.252 kb on + strand, within Dsui_0205 at 205.259 kb on + strand at 205.406 kb on - strand at 205.538 kb on - strand at 205.546 kb on + strand at 205.554 kb on + strand at 205.644 kb on + strand, within Dsui_0206 at 205.794 kb on - strand, within Dsui_0206 at 205.891 kb on + strand, within Dsui_0206 at 205.914 kb on - strand, within Dsui_0206 at 205.953 kb on - strand, within Dsui_0206 at 205.989 kb on + strand, within Dsui_0206 at 206.066 kb on - strand, within Dsui_0206 at 206.246 kb on - strand, within Dsui_0206 at 206.291 kb on + strand, within Dsui_0206 at 206.403 kb on + strand, within Dsui_0206 at 206.403 kb on + strand, within Dsui_0206 at 206.411 kb on - strand, within Dsui_0206 at 206.595 kb on - strand, within Dsui_0207 at 206.628 kb on + strand, within Dsui_0207 at 206.777 kb on + strand, within Dsui_0207 at 207.020 kb on + strand at 207.232 kb on + strand at 207.340 kb on + strand, within Dsui_0208 at 207.390 kb on + strand, within Dsui_0208 at 207.398 kb on - strand, within Dsui_0208 at 207.398 kb on - strand, within Dsui_0208 at 207.408 kb on - strand, within Dsui_0208 at 207.430 kb on + strand at 207.430 kb on + strand, within Dsui_0208 at 207.430 kb on + strand, within Dsui_0208 at 207.430 kb on + strand, within Dsui_0208 at 207.527 kb on - strand, within Dsui_0208
Per-strain Table
Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate remove 204,516 + Dsui_0204 0.87 -0.8 204,555 + Dsui_0204 0.88 -0.4 204,555 + Dsui_0204 0.88 -0.4 204,563 - Dsui_0204 0.88 +0.3 204,756 - -0.8 204,827 + +0.5 204,853 + +0.1 204,877 - +0.7 204,992 + Dsui_0205 0.24 +0.6 205,013 - Dsui_0205 0.28 +0.1 205,037 + Dsui_0205 0.32 +1.6 205,103 + Dsui_0205 0.43 -0.6 205,112 - Dsui_0205 0.44 -0.0 205,112 - Dsui_0205 0.44 -0.5 205,144 + Dsui_0205 0.49 +1.7 205,252 + Dsui_0205 0.67 -0.6 205,259 + +1.8 205,406 - -0.4 205,538 - +0.7 205,546 + -0.0 205,554 + -0.3 205,644 + Dsui_0206 0.18 +0.5 205,794 - Dsui_0206 0.31 -0.5 205,891 + Dsui_0206 0.40 -0.6 205,914 - Dsui_0206 0.42 -0.7 205,953 - Dsui_0206 0.46 +0.2 205,989 + Dsui_0206 0.49 -0.7 206,066 - Dsui_0206 0.56 -0.2 206,246 - Dsui_0206 0.72 -0.6 206,291 + Dsui_0206 0.76 -1.8 206,403 + Dsui_0206 0.86 -1.3 206,403 + Dsui_0206 0.86 -0.8 206,411 - Dsui_0206 0.87 +0.7 206,595 - Dsui_0207 0.10 -0.7 206,628 + Dsui_0207 0.18 +0.5 206,777 + Dsui_0207 0.53 +0.1 207,020 + +1.6 207,232 + +0.1 207,340 + Dsui_0208 0.10 +0.5 207,390 + Dsui_0208 0.12 +1.2 207,398 - Dsui_0208 0.12 -1.1 207,398 - Dsui_0208 0.12 -0.8 207,408 - Dsui_0208 0.12 +0.2 207,430 + +0.5 207,430 + Dsui_0208 0.13 +0.1 207,430 + Dsui_0208 0.13 +0.0 207,430 + Dsui_0208 0.13 -0.7 207,527 - Dsui_0208 0.15 +0.6
Or see this region's nucleotide sequence