Strain Fitness in Dechlorosoma suillum PS around Dsui_0015

Experiment: defined media with 40 mM sodium acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0014 and Dsui_0015 are separated by 134 nucleotidesDsui_0015 and Dsui_0016 are separated by 39 nucleotides Dsui_0014: Dsui_0014 - putative membrane protein, at 12,763 to 13,377 _0014 Dsui_0015: Dsui_0015 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 13,512 to 13,943 _0015 Dsui_0016: Dsui_0016 - transcriptional regulator, at 13,983 to 14,891 _0016 Position (kb) 13 14Strain fitness (log2 ratio) -2 -1 0 1 2 3at 12.604 kb on - strandat 12.609 kb on - strandat 12.711 kb on - strandat 12.781 kb on - strandat 12.781 kb on - strandat 12.929 kb on + strand, within Dsui_0014at 12.935 kb on + strand, within Dsui_0014at 12.950 kb on + strand, within Dsui_0014at 12.954 kb on - strand, within Dsui_0014at 12.954 kb on - strandat 13.011 kb on + strand, within Dsui_0014at 13.040 kb on + strand, within Dsui_0014at 13.040 kb on + strand, within Dsui_0014at 13.048 kb on - strandat 13.048 kb on - strand, within Dsui_0014at 13.127 kb on - strandat 13.223 kb on - strand, within Dsui_0014at 13.225 kb on - strandat 13.238 kb on + strand, within Dsui_0014at 13.253 kb on + strand, within Dsui_0014at 13.289 kb on + strand, within Dsui_0014at 13.297 kb on - strand, within Dsui_0014at 13.308 kb on - strand, within Dsui_0014at 13.357 kb on - strandat 13.457 kb on + strandat 13.510 kb on - strandat 13.522 kb on - strandat 13.525 kb on + strandat 13.525 kb on + strandat 13.598 kb on - strand, within Dsui_0015at 13.609 kb on + strand, within Dsui_0015at 13.678 kb on + strand, within Dsui_0015at 13.678 kb on + strandat 13.696 kb on + strandat 13.786 kb on + strand, within Dsui_0015at 13.786 kb on - strandat 13.853 kb on - strandat 13.935 kb on + strandat 14.245 kb on - strand, within Dsui_0016at 14.266 kb on - strand, within Dsui_0016at 14.346 kb on + strandat 14.370 kb on - strand, within Dsui_0016at 14.396 kb on + strand, within Dsui_0016at 14.423 kb on - strand, within Dsui_0016at 14.521 kb on - strand, within Dsui_0016at 14.539 kb on - strand, within Dsui_0016at 14.606 kb on + strand, within Dsui_0016at 14.673 kb on + strand, within Dsui_0016at 14.708 kb on + strand, within Dsui_0016at 14.769 kb on + strandat 14.776 kb on - strand, within Dsui_0016at 14.776 kb on - strand, within Dsui_0016at 14.866 kb on + strandat 14.866 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction defined media with 40 mM sodium acetate
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12,604 - +0.5
12,609 - -0.1
12,711 - +1.0
12,781 - +0.5
12,781 - +0.8
12,929 + Dsui_0014 0.27 -0.2
12,935 + Dsui_0014 0.28 +0.2
12,950 + Dsui_0014 0.30 +1.2
12,954 - Dsui_0014 0.31 -0.5
12,954 - +1.1
13,011 + Dsui_0014 0.40 +1.1
13,040 + Dsui_0014 0.45 +0.3
13,040 + Dsui_0014 0.45 +1.6
13,048 - +0.8
13,048 - Dsui_0014 0.46 +1.1
13,127 - +1.5
13,223 - Dsui_0014 0.75 -0.2
13,225 - -0.5
13,238 + Dsui_0014 0.77 +0.1
13,253 + Dsui_0014 0.80 +1.1
13,289 + Dsui_0014 0.86 -0.1
13,297 - Dsui_0014 0.87 +0.9
13,308 - Dsui_0014 0.89 +0.1
13,357 - +3.1
13,457 + +1.5
13,510 - -0.2
13,522 - -0.2
13,525 + +0.5
13,525 + +1.6
13,598 - Dsui_0015 0.20 -2.0
13,609 + Dsui_0015 0.22 -1.2
13,678 + Dsui_0015 0.38 -0.9
13,678 + +1.1
13,696 + +0.8
13,786 + Dsui_0015 0.63 -0.1
13,786 - +0.5
13,853 - +2.1
13,935 + +0.8
14,245 - Dsui_0016 0.29 -0.4
14,266 - Dsui_0016 0.31 -1.5
14,346 + +2.1
14,370 - Dsui_0016 0.43 -1.9
14,396 + Dsui_0016 0.45 -2.4
14,423 - Dsui_0016 0.48 -2.1
14,521 - Dsui_0016 0.59 -1.3
14,539 - Dsui_0016 0.61 -2.6
14,606 + Dsui_0016 0.69 -0.9
14,673 + Dsui_0016 0.76 -0.5
14,708 + Dsui_0016 0.80 -0.2
14,769 + +0.1
14,776 - Dsui_0016 0.87 -0.7
14,776 - Dsui_0016 0.87 -1.3
14,866 + -1.4
14,866 + -0.9

Or see this region's nucleotide sequence