Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3169

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3168 and DvMF_3169 are separated by 295 nucleotidesDvMF_3169 and DvMF_3170 are separated by 212 nucleotides DvMF_3168: DvMF_3168 - hypothetical protein (RefSeq), at 3,994,159 to 3,995,073 _3168 DvMF_3169: DvMF_3169 - Heavy metal transport/detoxification protein (RefSeq), at 3,995,369 to 3,995,566 _3169 DvMF_3170: DvMF_3170 - heavy metal translocating P-type ATPase (RefSeq), at 3,995,779 to 3,998,589 _3170 Position (kb) 3995 3996Strain fitness (log2 ratio) -2 -1 0 1at 3994.498 kb on + strand, within DvMF_3168at 3994.498 kb on + strand, within DvMF_3168at 3994.869 kb on + strand, within DvMF_3168at 3994.888 kb on + strand, within DvMF_3168at 3994.889 kb on + strand, within DvMF_3168at 3994.930 kb on + strand, within DvMF_3168at 3995.169 kb on - strandat 3995.358 kb on + strandat 3995.367 kb on + strandat 3995.559 kb on - strandat 3995.561 kb on + strandat 3995.615 kb on - strandat 3995.657 kb on - strandat 3996.017 kb on - strandat 3996.128 kb on - strand, within DvMF_3170at 3996.186 kb on + strand, within DvMF_3170at 3996.237 kb on + strand, within DvMF_3170at 3996.494 kb on - strand, within DvMF_3170

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,994,498 + DvMF_3168 0.37 -1.5
3,994,498 + DvMF_3168 0.37 -1.4
3,994,869 + DvMF_3168 0.78 -1.0
3,994,888 + DvMF_3168 0.80 -1.8
3,994,889 + DvMF_3168 0.80 -1.1
3,994,930 + DvMF_3168 0.84 -1.9
3,995,169 - -0.3
3,995,358 + -0.3
3,995,367 + -0.1
3,995,559 - -0.6
3,995,561 + -0.3
3,995,615 - -0.5
3,995,657 - -0.2
3,996,017 - -0.3
3,996,128 - DvMF_3170 0.12 -0.4
3,996,186 + DvMF_3170 0.14 +0.4
3,996,237 + DvMF_3170 0.16 +0.1
3,996,494 - DvMF_3170 0.25 -0.3

Or see this region's nucleotide sequence