Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3110

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3109 and DvMF_3110 are separated by 253 nucleotidesDvMF_3110 and DvMF_3111 are separated by 248 nucleotides DvMF_3109: DvMF_3109 - dolichyl-phosphate-mannose-protein mannosyltransferase family protein (RefSeq), at 3,920,751 to 3,922,748 _3109 DvMF_3110: DvMF_3110 - no description, at 3,923,002 to 3,923,571 _3110 DvMF_3111: DvMF_3111 - MATE efflux family protein (RefSeq), at 3,923,820 to 3,925,289 _3111 Position (kb) 3923 3924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3922.179 kb on + strand, within DvMF_3109at 3922.262 kb on + strand, within DvMF_3109at 3922.726 kb on + strandat 3923.563 kb on - strandat 3923.563 kb on - strandat 3923.601 kb on + strandat 3923.721 kb on + strandat 3923.821 kb on - strandat 3923.883 kb on + strandat 3923.939 kb on - strandat 3924.114 kb on - strand, within DvMF_3111at 3924.118 kb on + strand, within DvMF_3111

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,922,179 + DvMF_3109 0.71 -2.4
3,922,262 + DvMF_3109 0.76 -4.0
3,922,726 + -3.5
3,923,563 - -0.1
3,923,563 - -0.4
3,923,601 + -0.9
3,923,721 + -0.6
3,923,821 - +0.1
3,923,883 + +0.1
3,923,939 - -0.0
3,924,114 - DvMF_3111 0.20 -0.2
3,924,118 + DvMF_3111 0.20 -0.3

Or see this region's nucleotide sequence