Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3106

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3104 and rpmB are separated by 241 nucleotidesrpmB and DvMF_3106 are separated by 147 nucleotidesDvMF_3106 and DvMF_3107 are separated by 332 nucleotides DvMF_3104: DvMF_3104 - protein of unknown function DUF177 (RefSeq), at 3,916,156 to 3,916,767 _3104 DvMF_3105: rpmB - 50S ribosomal protein L28 (RefSeq), at 3,917,009 to 3,917,218 rpmB DvMF_3106: DvMF_3106 - protein of unknown function DUF6 transmembrane (RefSeq), at 3,917,366 to 3,918,346 _3106 DvMF_3107: DvMF_3107 - FxsA cytoplasmic membrane protein (RefSeq), at 3,918,679 to 3,919,440 _3107 Position (kb) 3917 3918 3919Strain fitness (log2 ratio) -1 0 1at 3916.436 kb on + strand, within DvMF_3104at 3916.734 kb on + strandat 3916.854 kb on - strandat 3917.376 kb on - strandat 3917.407 kb on - strandat 3917.479 kb on + strand, within DvMF_3106at 3917.705 kb on - strand, within DvMF_3106at 3918.110 kb on + strand, within DvMF_3106at 3918.111 kb on - strand, within DvMF_3106at 3918.242 kb on + strand, within DvMF_3106at 3918.263 kb on + strandat 3918.273 kb on - strandat 3918.658 kb on - strandat 3918.676 kb on + strandat 3918.692 kb on + strandat 3919.185 kb on - strand, within DvMF_3107at 3919.220 kb on + strand, within DvMF_3107

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
remove
3,916,436 + DvMF_3104 0.46 -1.1
3,916,734 + +1.1
3,916,854 - +0.2
3,917,376 - -0.5
3,917,407 - -0.4
3,917,479 + DvMF_3106 0.12 -0.3
3,917,705 - DvMF_3106 0.35 +0.5
3,918,110 + DvMF_3106 0.76 -0.1
3,918,111 - DvMF_3106 0.76 -0.1
3,918,242 + DvMF_3106 0.89 -0.3
3,918,263 + -0.4
3,918,273 - -0.0
3,918,658 - -0.6
3,918,676 + +1.5
3,918,692 + -0.6
3,919,185 - DvMF_3107 0.66 -0.1
3,919,220 + DvMF_3107 0.71 -0.3

Or see this region's nucleotide sequence