Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2836

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaK and DvMF_2836 are separated by 41 nucleotidesDvMF_2836 and DvMF_2837 are separated by 24 nucleotidesDvMF_2837 and gatA are separated by 377 nucleotides DvMF_2835: dnaK - molecular chaperone DnaK (RefSeq), at 3,580,091 to 3,582,010 dnaK DvMF_2836: DvMF_2836 - hypothetical protein (RefSeq), at 3,582,052 to 3,584,379 _2836 DvMF_2837: DvMF_2837 - glutamyl-tRNA(Gln) amidotransferase, C subunit (RefSeq), at 3,584,404 to 3,584,691 _2837 DvMF_2838: gatA - aspartyl/glutamyl-tRNA amidotransferase subunit A (RefSeq), at 3,585,069 to 3,586,574 gatA Position (kb) 3582 3583 3584 3585Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3582.044 kb on + strandat 3582.062 kb on - strandat 3582.329 kb on - strand, within DvMF_2836at 3582.343 kb on - strand, within DvMF_2836at 3582.388 kb on + strand, within DvMF_2836at 3582.561 kb on + strand, within DvMF_2836at 3582.731 kb on - strand, within DvMF_2836at 3583.260 kb on + strand, within DvMF_2836at 3583.608 kb on - strand, within DvMF_2836at 3583.744 kb on + strand, within DvMF_2836at 3584.045 kb on + strand, within DvMF_2836at 3584.284 kb on + strandat 3584.396 kb on - strandat 3585.026 kb on + strandat 3585.052 kb on - strandat 3585.054 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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3,582,044 + -0.3
3,582,062 - -0.3
3,582,329 - DvMF_2836 0.12 -3.5
3,582,343 - DvMF_2836 0.12 -2.7
3,582,388 + DvMF_2836 0.14 -3.9
3,582,561 + DvMF_2836 0.22 -3.1
3,582,731 - DvMF_2836 0.29 -3.7
3,583,260 + DvMF_2836 0.52 -3.5
3,583,608 - DvMF_2836 0.67 -1.4
3,583,744 + DvMF_2836 0.73 -2.5
3,584,045 + DvMF_2836 0.86 -2.8
3,584,284 + -3.9
3,584,396 - -0.2
3,585,026 + +0.0
3,585,052 - -0.5
3,585,054 + -0.6

Or see this region's nucleotide sequence