Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2303

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2301 and DvMF_2302 are separated by 98 nucleotidesDvMF_2302 and DvMF_2303 are separated by 136 nucleotidesDvMF_2303 and DvMF_2304 are separated by 161 nucleotidesDvMF_2304 and hisH overlap by 8 nucleotides DvMF_2301: DvMF_2301 - molybdenum cofactor biosynthesis protein C (RefSeq), at 2,891,919 to 2,892,410 _2301 DvMF_2302: DvMF_2302 - Dimethylmenaquinone methyltransferase (RefSeq), at 2,892,509 to 2,893,186 _2302 DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333 _2303 DvMF_2304: DvMF_2304 - imidazole glycerol phosphate synthase subunit HisF (RefSeq), at 2,894,495 to 2,895,274 _2304 DvMF_2305: hisH - IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data), at 2,895,267 to 2,895,905 hisH Position (kb) 2893 2894 2895Strain fitness (log2 ratio) -1 0 1at 2892.328 kb on - strand, within DvMF_2301at 2892.328 kb on - strand, within DvMF_2301at 2892.565 kb on + strandat 2892.906 kb on + strand, within DvMF_2302at 2893.020 kb on + strand, within DvMF_2302at 2893.030 kb on - strand, within DvMF_2302at 2893.175 kb on - strandat 2893.257 kb on + strandat 2893.668 kb on + strand, within DvMF_2303at 2893.942 kb on + strand, within DvMF_2303at 2894.119 kb on + strand, within DvMF_2303at 2894.512 kb on + strandat 2894.553 kb on + strandat 2894.615 kb on - strand, within DvMF_2304at 2894.896 kb on + strand, within DvMF_2304at 2895.003 kb on + strand, within DvMF_2304at 2895.005 kb on - strand, within DvMF_2304at 2895.216 kb on + strandat 2895.282 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,892,328 - DvMF_2301 0.83 +0.2
2,892,328 - DvMF_2301 0.83 -0.3
2,892,565 + -0.1
2,892,906 + DvMF_2302 0.59 -0.5
2,893,020 + DvMF_2302 0.75 +0.2
2,893,030 - DvMF_2302 0.77 +0.2
2,893,175 - -0.1
2,893,257 + +0.0
2,893,668 + DvMF_2303 0.34 -1.2
2,893,942 + DvMF_2303 0.61 -0.8
2,894,119 + DvMF_2303 0.79 -0.6
2,894,512 + +0.3
2,894,553 + -1.0
2,894,615 - DvMF_2304 0.15 -0.3
2,894,896 + DvMF_2304 0.51 -0.9
2,895,003 + DvMF_2304 0.65 -0.1
2,895,005 - DvMF_2304 0.65 -0.1
2,895,216 + -0.3
2,895,282 - -0.6

Or see this region's nucleotide sequence