Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1707

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1706 and DvMF_1707 are separated by 306 nucleotidesDvMF_1707 and DvMF_1708 are separated by 61 nucleotidesDvMF_1708 and DvMF_1709 are separated by 105 nucleotides DvMF_1706: DvMF_1706 - glucosamine/fructose-6-phosphate aminotransferase, isomerizing (RefSeq), at 2,082,972 to 2,084,795 _1706 DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616 _1707 DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367 _1708 DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829 _1709 Position (kb) 2085 2086 2087Strain fitness (log2 ratio) -1 0 1at 2084.977 kb on - strandat 2085.329 kb on - strand, within DvMF_1707at 2085.377 kb on + strand, within DvMF_1707at 2085.378 kb on - strand, within DvMF_1707at 2085.400 kb on + strand, within DvMF_1707at 2085.452 kb on - strand, within DvMF_1707at 2085.457 kb on + strand, within DvMF_1707at 2085.783 kb on - strand, within DvMF_1707at 2086.016 kb on - strand, within DvMF_1707at 2086.272 kb on - strand, within DvMF_1707at 2086.384 kb on + strand, within DvMF_1707at 2086.392 kb on - strand, within DvMF_1707at 2086.449 kb on + strand, within DvMF_1707at 2086.604 kb on - strandat 2086.609 kb on - strandat 2086.678 kb on + strandat 2086.678 kb on + strandat 2086.937 kb on - strand, within DvMF_1708at 2086.992 kb on + strand, within DvMF_1708at 2086.994 kb on - strand, within DvMF_1708at 2087.459 kb on + strandat 2087.477 kb on - strandat 2087.601 kb on - strand, within DvMF_1709at 2087.606 kb on + strand, within DvMF_1709at 2087.606 kb on + strand, within DvMF_1709

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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2,084,977 - +0.0
2,085,329 - DvMF_1707 0.15 -0.4
2,085,377 + DvMF_1707 0.18 -0.4
2,085,378 - DvMF_1707 0.18 -0.2
2,085,400 + DvMF_1707 0.20 +0.1
2,085,452 - DvMF_1707 0.23 -0.4
2,085,457 + DvMF_1707 0.23 -0.1
2,085,783 - DvMF_1707 0.45 -0.2
2,086,016 - DvMF_1707 0.60 -0.2
2,086,272 - DvMF_1707 0.77 -0.3
2,086,384 + DvMF_1707 0.85 -1.1
2,086,392 - DvMF_1707 0.85 +0.3
2,086,449 + DvMF_1707 0.89 -0.0
2,086,604 - +0.1
2,086,609 - -0.8
2,086,678 + -0.5
2,086,678 + -0.2
2,086,937 - DvMF_1708 0.38 -0.2
2,086,992 + DvMF_1708 0.46 -0.5
2,086,994 - DvMF_1708 0.46 -0.2
2,087,459 + -0.2
2,087,477 - -0.8
2,087,601 - DvMF_1709 0.36 -0.7
2,087,606 + DvMF_1709 0.37 -0.4
2,087,606 + DvMF_1709 0.37 -0.1

Or see this region's nucleotide sequence