Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1556

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1554 and DvMF_1555 are separated by 63 nucleotidesDvMF_1555 and DvMF_1556 are separated by 150 nucleotidesDvMF_1556 and DvMF_1557 are separated by 461 nucleotides DvMF_1554: DvMF_1554 - sulfite reductase, dissimilatory-type beta subunit (RefSeq), at 1,918,345 to 1,919,490 _1554 DvMF_1555: DvMF_1555 - Dissimilatory sulfite reductase D (RefSeq), at 1,919,554 to 1,919,787 _1555 DvMF_1556: DvMF_1556 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,919,938 to 1,921,626 _1556 DvMF_1557: DvMF_1557 - hypothetical protein (RefSeq), at 1,922,088 to 1,922,984 _1557 Position (kb) 1919 1920 1921 1922Strain fitness (log2 ratio) -1 0 1at 1920.911 kb on - strand, within DvMF_1556at 1922.073 kb on + strandat 1922.117 kb on - strandat 1922.138 kb on + strandat 1922.295 kb on - strand, within DvMF_1557

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,920,911 - DvMF_1556 0.58 +0.0
1,922,073 + -0.9
1,922,117 - -0.2
1,922,138 + -0.3
1,922,295 - DvMF_1557 0.23 +0.2

Or see this region's nucleotide sequence