Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1169

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1168 and DvMF_1169 are separated by 228 nucleotidesDvMF_1169 and DvMF_1170 are separated by 410 nucleotides DvMF_1168: DvMF_1168 - Diaminopimelate epimerase-like protein (RefSeq), at 1,442,677 to 1,443,600 _1168 DvMF_1169: DvMF_1169 - hypothetical protein (RefSeq), at 1,443,829 to 1,446,888 _1169 DvMF_1170: DvMF_1170 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,447,299 to 1,448,294 _1170 Position (kb) 1443 1444 1445 1446 1447Strain fitness (log2 ratio) -1 0 1 2at 1443.017 kb on - strand, within DvMF_1168at 1443.215 kb on + strand, within DvMF_1168at 1443.255 kb on - strand, within DvMF_1168at 1443.255 kb on - strand, within DvMF_1168at 1443.264 kb on - strand, within DvMF_1168at 1443.949 kb on - strandat 1444.036 kb on - strandat 1444.087 kb on + strandat 1444.087 kb on + strandat 1444.087 kb on + strandat 1444.803 kb on + strand, within DvMF_1169at 1444.837 kb on - strand, within DvMF_1169at 1444.867 kb on - strand, within DvMF_1169at 1445.077 kb on + strand, within DvMF_1169at 1445.086 kb on - strand, within DvMF_1169at 1445.160 kb on + strand, within DvMF_1169at 1445.178 kb on + strand, within DvMF_1169at 1445.519 kb on + strand, within DvMF_1169at 1445.548 kb on + strand, within DvMF_1169at 1445.585 kb on + strand, within DvMF_1169at 1445.593 kb on - strand, within DvMF_1169at 1445.600 kb on + strand, within DvMF_1169at 1445.603 kb on - strand, within DvMF_1169at 1445.669 kb on + strand, within DvMF_1169at 1445.677 kb on - strand, within DvMF_1169at 1445.811 kb on - strand, within DvMF_1169at 1445.913 kb on + strand, within DvMF_1169at 1446.145 kb on + strand, within DvMF_1169at 1446.153 kb on - strand, within DvMF_1169at 1446.358 kb on - strand, within DvMF_1169at 1446.479 kb on - strand, within DvMF_1169at 1446.697 kb on + strandat 1446.726 kb on - strandat 1446.795 kb on - strandat 1447.093 kb on - strandat 1447.238 kb on + strandat 1447.246 kb on - strandat 1447.246 kb on - strandat 1447.519 kb on - strand, within DvMF_1170at 1447.741 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,443,017 - DvMF_1168 0.37 -0.4
1,443,215 + DvMF_1168 0.58 -0.4
1,443,255 - DvMF_1168 0.63 -0.7
1,443,255 - DvMF_1168 0.63 -0.1
1,443,264 - DvMF_1168 0.64 -0.4
1,443,949 - +1.2
1,444,036 - +1.0
1,444,087 + +0.1
1,444,087 + +0.2
1,444,087 + -0.4
1,444,803 + DvMF_1169 0.32 +0.5
1,444,837 - DvMF_1169 0.33 +0.2
1,444,867 - DvMF_1169 0.34 +0.1
1,445,077 + DvMF_1169 0.41 -0.4
1,445,086 - DvMF_1169 0.41 +0.3
1,445,160 + DvMF_1169 0.43 -0.4
1,445,178 + DvMF_1169 0.44 -0.2
1,445,519 + DvMF_1169 0.55 +0.2
1,445,548 + DvMF_1169 0.56 +0.1
1,445,585 + DvMF_1169 0.57 -0.0
1,445,593 - DvMF_1169 0.58 +0.0
1,445,600 + DvMF_1169 0.58 +0.2
1,445,603 - DvMF_1169 0.58 -0.3
1,445,669 + DvMF_1169 0.60 -0.0
1,445,677 - DvMF_1169 0.60 +0.3
1,445,811 - DvMF_1169 0.65 +0.0
1,445,913 + DvMF_1169 0.68 -0.1
1,446,145 + DvMF_1169 0.76 +0.2
1,446,153 - DvMF_1169 0.76 -0.2
1,446,358 - DvMF_1169 0.83 +0.3
1,446,479 - DvMF_1169 0.87 +0.4
1,446,697 + +0.2
1,446,726 - +0.2
1,446,795 - -0.4
1,447,093 - -0.5
1,447,238 + -0.1
1,447,246 - -0.2
1,447,246 - -0.7
1,447,519 - DvMF_1170 0.22 -0.1
1,447,741 + +1.8

Or see this region's nucleotide sequence