Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1142

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1141 and DvMF_1142 are separated by 255 nucleotidesDvMF_1142 and DvMF_1143 are separated by 607 nucleotides DvMF_1141: DvMF_1141 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 1,398,572 to 1,401,739 _1141 DvMF_1142: DvMF_1142 - SNARE associated Golgi protein (RefSeq), at 1,401,995 to 1,402,645 _1142 DvMF_1143: DvMF_1143 - flavodoxin (RefSeq), at 1,403,253 to 1,403,699 _1143 Position (kb) 1401 1402 1403Strain fitness (log2 ratio) -1 0 1at 1401.073 kb on + strand, within DvMF_1141at 1401.289 kb on + strand, within DvMF_1141at 1401.314 kb on + strand, within DvMF_1141at 1401.401 kb on + strand, within DvMF_1141at 1401.444 kb on - strandat 1401.679 kb on + strandat 1401.865 kb on - strandat 1402.138 kb on + strand, within DvMF_1142at 1402.138 kb on + strand, within DvMF_1142at 1402.418 kb on + strand, within DvMF_1142at 1402.553 kb on - strand, within DvMF_1142at 1403.026 kb on + strandat 1403.214 kb on - strandat 1403.329 kb on + strand, within DvMF_1143at 1403.412 kb on - strand, within DvMF_1143

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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1,401,073 + DvMF_1141 0.79 -0.1
1,401,289 + DvMF_1141 0.86 -0.4
1,401,314 + DvMF_1141 0.87 +0.1
1,401,401 + DvMF_1141 0.89 -0.2
1,401,444 - -0.8
1,401,679 + -0.5
1,401,865 - -0.3
1,402,138 + DvMF_1142 0.22 +0.0
1,402,138 + DvMF_1142 0.22 -1.3
1,402,418 + DvMF_1142 0.65 -0.2
1,402,553 - DvMF_1142 0.86 -1.0
1,403,026 + +0.1
1,403,214 - -1.0
1,403,329 + DvMF_1143 0.17 +0.2
1,403,412 - DvMF_1143 0.36 -0.1

Or see this region's nucleotide sequence