Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0413

Experiment: MoYLS4 with Carbenicillin 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0412 and DvMF_0413 are separated by 544 nucleotidesDvMF_0413 and DvMF_0414 are separated by 75 nucleotides DvMF_0412: DvMF_0412 - protein-L-isoaspartate O-methyltransferase (RefSeq), at 481,260 to 481,907 _0412 DvMF_0413: DvMF_0413 - putative signal transduction protein with CBS domains (RefSeq), at 482,452 to 482,880 _0413 DvMF_0414: DvMF_0414 - Peptidase M23 (RefSeq), at 482,956 to 484,266 _0414 Position (kb) 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1at 481.591 kb on + strand, within DvMF_0412at 481.731 kb on - strand, within DvMF_0412at 481.736 kb on - strand, within DvMF_0412at 481.742 kb on - strand, within DvMF_0412at 481.762 kb on + strand, within DvMF_0412at 482.085 kb on - strandat 482.122 kb on - strandat 482.669 kb on - strand, within DvMF_0413at 482.797 kb on + strand, within DvMF_0413at 482.864 kb on - strandat 482.874 kb on + strandat 482.904 kb on - strandat 483.050 kb on - strandat 483.339 kb on + strand, within DvMF_0414at 483.339 kb on + strand, within DvMF_0414at 483.339 kb on + strand, within DvMF_0414at 483.347 kb on - strand, within DvMF_0414at 483.478 kb on + strand, within DvMF_0414

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Carbenicillin 0.0625 mg/ml
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481,591 + DvMF_0412 0.51 -0.6
481,731 - DvMF_0412 0.73 -0.5
481,736 - DvMF_0412 0.73 -0.0
481,742 - DvMF_0412 0.74 -0.4
481,762 + DvMF_0412 0.77 -0.1
482,085 - -0.7
482,122 - -0.5
482,669 - DvMF_0413 0.51 -1.2
482,797 + DvMF_0413 0.80 -0.6
482,864 - -1.0
482,874 + -0.2
482,904 - -1.9
483,050 - -3.4
483,339 + DvMF_0414 0.29 -2.7
483,339 + DvMF_0414 0.29 -3.7
483,339 + DvMF_0414 0.29 -3.7
483,347 - DvMF_0414 0.30 -3.2
483,478 + DvMF_0414 0.40 -2.7

Or see this region's nucleotide sequence