Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3441 and Shewana3_3442 are separated by 180 nucleotides Shewana3_3442 and Shewana3_3443 are separated by 129 nucleotides Shewana3_3443 and Shewana3_3444 are separated by 8 nucleotides Shewana3_3444 and Shewana3_3445 are separated by 106 nucleotides
Shewana3_3441: Shewana3_3441 - hypothetical protein (RefSeq), at 4,123,590 to 4,124,747
_3441
Shewana3_3442: Shewana3_3442 - hypothetical protein (RefSeq), at 4,124,928 to 4,125,533
_3442
Shewana3_3443: Shewana3_3443 - endonuclease I (RefSeq), at 4,125,663 to 4,126,436
_3443
Shewana3_3444: Shewana3_3444 - 16S ribosomal RNA methyltransferase RsmE (RefSeq), at 4,126,445 to 4,127,176
_3444
Shewana3_3445: Shewana3_3445 - glutathione synthetase (RefSeq), at 4,127,283 to 4,128,230
_3445
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4124.664 kb on - strand at 4124.729 kb on + strand at 4124.834 kb on + strand at 4124.842 kb on - strand at 4124.842 kb on - strand at 4124.872 kb on + strand at 4125.175 kb on + strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.215 kb on - strand, within Shewana3_3442 at 4125.341 kb on + strand, within Shewana3_3442 at 4125.348 kb on - strand, within Shewana3_3442 at 4125.353 kb on + strand, within Shewana3_3442 at 4125.681 kb on + strand at 4125.681 kb on + strand at 4125.689 kb on - strand at 4125.689 kb on - strand at 4125.850 kb on - strand, within Shewana3_3443 at 4125.907 kb on - strand, within Shewana3_3443 at 4126.008 kb on - strand, within Shewana3_3443 at 4126.026 kb on + strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.070 kb on - strand, within Shewana3_3443 at 4126.320 kb on + strand, within Shewana3_3443 at 4126.351 kb on - strand, within Shewana3_3443 at 4126.510 kb on + strand at 4126.513 kb on - strand at 4126.518 kb on - strand at 4126.535 kb on + strand, within Shewana3_3444 at 4126.640 kb on - strand, within Shewana3_3444 at 4126.791 kb on + strand, within Shewana3_3444 at 4127.005 kb on - strand, within Shewana3_3444 at 4127.108 kb on - strand at 4127.200 kb on + strand at 4127.369 kb on + strand at 4127.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 4,124,664 - +0.3 4,124,729 + -0.8 4,124,834 + -1.4 4,124,842 - -3.5 4,124,842 - +0.1 4,124,872 + +0.3 4,125,175 + Shewana3_3442 0.41 +0.2 4,125,215 - Shewana3_3442 0.47 +0.1 4,125,215 - Shewana3_3442 0.47 +0.3 4,125,341 + Shewana3_3442 0.68 +0.2 4,125,348 - Shewana3_3442 0.69 -0.2 4,125,353 + Shewana3_3442 0.70 +0.5 4,125,681 + +0.1 4,125,681 + +0.1 4,125,689 - +0.2 4,125,689 - -1.8 4,125,850 - Shewana3_3443 0.24 -0.0 4,125,907 - Shewana3_3443 0.32 +0.4 4,126,008 - Shewana3_3443 0.45 +0.0 4,126,026 + Shewana3_3443 0.47 +0.6 4,126,070 - Shewana3_3443 0.53 +0.6 4,126,070 - Shewana3_3443 0.53 +0.8 4,126,320 + Shewana3_3443 0.85 +0.6 4,126,351 - Shewana3_3443 0.89 +0.2 4,126,510 + +0.5 4,126,513 - -0.1 4,126,518 - -0.8 4,126,535 + Shewana3_3444 0.12 +0.1 4,126,640 - Shewana3_3444 0.27 +0.2 4,126,791 + Shewana3_3444 0.47 -1.3 4,127,005 - Shewana3_3444 0.77 -0.5 4,127,108 - -0.6 4,127,200 + +0.3 4,127,369 + -1.0 4,127,369 + -1.6
Or see this region's nucleotide sequence