Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2802

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaE and rnhB are separated by 117 nucleotidesrnhB and lpxB overlap by 1 nucleotideslpxB and Shewana3_2803 are separated by 116 nucleotidesShewana3_2803 and fabZ overlap by 4 nucleotides Shewana3_2800: dnaE - DNA polymerase III subunit alpha (RefSeq), at 3,344,158 to 3,347,634 dnaE Shewana3_2801: rnhB - ribonuclease HII (RefSeq), at 3,347,752 to 3,348,381 rnhB Shewana3_2802: lpxB - lipid-A-disaccharide synthase (RefSeq), at 3,348,381 to 3,349,538 lpxB Shewana3_2803: Shewana3_2803 - UDP-N-acetylglucosamine acyltransferase (RefSeq), at 3,349,655 to 3,350,425 _2803 Shewana3_2804: fabZ - (3R)-hydroxymyristoyl-ACP dehydratase (RefSeq), at 3,350,422 to 3,350,874 fabZ Position (kb) 3348 3349 3350Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3347.757 kb on - strandat 3347.757 kb on - strandat 3347.843 kb on + strand, within rnhBat 3347.852 kb on + strand, within rnhBat 3347.860 kb on - strand, within rnhBat 3347.860 kb on - strand, within rnhBat 3348.269 kb on + strand, within rnhBat 3348.330 kb on - strandat 3348.426 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,347,757 - +1.5
3,347,757 - +1.0
3,347,843 + rnhB Shewana3_2801 0.14 -1.7
3,347,852 + rnhB Shewana3_2801 0.16 -3.1
3,347,860 - rnhB Shewana3_2801 0.17 +2.9
3,347,860 - rnhB Shewana3_2801 0.17 +0.3
3,348,269 + rnhB Shewana3_2801 0.82 -0.6
3,348,330 - +0.3
3,348,426 - +0.9

Or see this region's nucleotide sequence